PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn185121

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 390aa MW: 43198.4 Da PI: 8.1736

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn185121	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.4	1.4e-32	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LHerF+ av+qLGG++kAtPkt+l++m+++gLtl+h+kSHLQkYRl Achn185121 47 KPRLKWTQDLHERFIAAVNQLGGADKATPKTVLKHMGIPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.875	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-30	45	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-16	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-23	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-10	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-23	144	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MYHHHHHQGK NIHPSSSRAS IPPERHLFLQ GGNGAGDSGL VLSTDAKPRL KWTQDLHERF 60 IAAVNQLGGA DKATPKTVLK HMGIPGLTLY HLKSHLQKYR LSKNLHGQAN SGGNKTVAGE 120 RMSETNGSHT SNPTIGPQTN ENLQIGEAIQ MQIKVQRRLH EQLEVQRHLQ LRIEAQGKYL 180 QSVLEKAQET LGRQNLGTVG LEAAKVQLSE LVSKVSTQCL NSTFSGVKEL PGGLCPQQRQ 240 TFQPTDCSMD SCLTSCEGSQ RDQDMHKNGM GLIAFNSNAP FWPKEMGKNT ERALPIEVNS 300 DDLSMGVGLQ GGNGTSSSYL ERRFRGMDED LNFREQTTSR ADSIQQEDEK MSQKYKLLYF 360 APKLDLNTRD ENDAASNCKQ IDLNGFSWN*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MYHHHHHQGK NIHPSSSRAS IPPERHLFLQ GGNGAGDSGL VLSTDAKPRL KWTQDLHERF  60
IAAVNQLGGA DKATPKTVLK HMGIPGLTLY HLKSHLQKYR LSKNLHGQAN SGGNKTVAGE  120
RMSETNGSHT SNPTIGPQTN ENLQIGEAIQ MQIKVQRRLH EQLEVQRHLQ LRIEAQGKYL  180
QSVLEKAQET LGRQNLGTVG LEAAKVQLSE LVSKVSTQCL NSTFSGVKEL PGGLCPQQRQ  240
TFQPTDCSMD SCLTSCEGSQ RDQDMHKNGM GLIAFNSNAP FWPKEMGKNT ERALPIEVNS  300
DDLSMGVGLQ GGNGTSSSYL ERRFRGMDED LNFREQTTSR ADSIQQEDEK MSQKYKLLYF  360
APKLDLNTRD ENDAASNCKQ IDLNGFSWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028121034.1	0.0	myb-related protein 2-like isoform X2
Refseq	XP_028121035.1	0.0	myb-related protein 2-like isoform X2
Swissprot	Q9SQQ9	1e-132	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2R6R506	0.0	A0A2R6R506_ACTCH; Myb-related protein
STRING	POPTR_0013s05670.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-134	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]