PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn185081

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 394aa MW: 44501.8 Da PI: 6.5905

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn185081	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.5	8.6e-56	13	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 lppGfrFhPtdee++ +yL++kv ++++++ +++evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ ++ Achn185081 13 LPPGFRFHPTDEEIIADYLTQKVMNTTFTA-IALAEVDLNKIEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGkkGN 110 79***********************999.88***********99999************************************974444 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 l+g+kktLvfykgrapkgek++Wvmheyrle Achn185081 111 CLIGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 142 55**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-62	8	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.999	13	166	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MEEVDGGHNL MELPPGFRFH PTDEEIIADY LTQKVMNTTF TAIALAEVDL NKIEPWDLPK 60 KAKMGEKEWY FFCQRDRKYP TGMRTNRATE SGYWKATGKD KEIYKGKKGN CLIGMKKTLV 120 FYKGRAPKGE KSNWVMHEYR LEGKLSYYNF PKPAKDEWVV CRVFHKSTVI KRSPIRRMDS 180 FAVDDLLDYP NSLPPLIDPP PYSNSDRPAG CSSFTEYSED DHDVKGKATV SSSSAARSSD 240 GGDYFSYMNN DQNNHFIAHN SSHQARLGYS THDSTFYPQI QIANPNFPFQ ASPDDLVGRY 300 LHQERMGVPV PNFTGSMSYM KTDQAILRSA KREASHGNMT TGSEISSSGL EVSKKDIRSS 360 AISSIRSYDD QDLEEPSVGG LDPISDLDYL LNY*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MEEVDGGHNL MELPPGFRFH PTDEEIIADY LTQKVMNTTF TAIALAEVDL NKIEPWDLPK  60
KAKMGEKEWY FFCQRDRKYP TGMRTNRATE SGYWKATGKD KEIYKGKKGN CLIGMKKTLV  120
FYKGRAPKGE KSNWVMHEYR LEGKLSYYNF PKPAKDEWVV CRVFHKSTVI KRSPIRRMDS  180
FAVDDLLDYP NSLPPLIDPP PYSNSDRPAG CSSFTEYSED DHDVKGKATV SSSSAARSSD  240
GGDYFSYMNN DQNNHFIAHN SSHQARLGYS THDSTFYPQI QIANPNFPFQ ASPDDLVGRY  300
LHQERMGVPV PNFTGSMSYM KTDQAILRSA KREASHGNMT TGSEISSSGL EVSKKDIRSS  360
AISSIRSYDD QDLEEPSVGG LDPISDLDYL LNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	11	168	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	11	168	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	11	168	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	11	168	15	167	NO APICAL MERISTEM PROTEIN
4dul_A	1e-51	11	168	15	167	NAC domain-containing protein 19
4dul_B	1e-51	11	168	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277068.1	1e-136	PREDICTED: NAC domain-containing protein 92
Refseq	XP_010653830.1	1e-136	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FK44	1e-105	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2R6S1T2	0.0	A0A2R6S1T2_ACTCH; NAC domain-containing protein
STRING	VIT_08s0007g07640.t01	1e-135	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-101	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]