PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn182891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 268aa    MW: 29982.3 Da    PI: 6.3158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn182891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.6e-1667112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v ++G+ +W++Ia+++  gR++k+c++rw++ 
       Achn182891  67 RGHWRPAEDSKLKELVGLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 112
                      899*****************************.***********996 PP
2Myb_DNA-binding53.74.9e-17119162146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e+l  a+ ++G++ W+ Iar ++ gRt++ +k++w+ 
       Achn182891 119 RKAFSEEEEERLMAAHGLYGNK-WAMIARLFP-GRTDNAVKNHWHV 162
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.61262113IPR017930Myb domain
SMARTSM007171.8E-1366115IPR001005SANT/Myb domain
PfamPF002493.5E-1567112IPR001005SANT/Myb domain
SuperFamilySSF466892.1E-2767160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-2568120IPR009057Homeodomain-like
CDDcd001671.38E-1170111No hitNo description
PROSITE profilePS5129425.614114168IPR017930Myb domain
SMARTSM007171.8E-13118166IPR001005SANT/Myb domain
PfamPF002491.3E-13119161IPR001005SANT/Myb domain
CDDcd001671.57E-9121161No hitNo description
Gene3DG3DSA:1.10.10.602.6E-20121167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGIKDDGGED LSWGFAFMGK GENSNSNSNE SIDLNASLND DDEEMRENMN DLKATESSSG  60
QSKLCARGHW RPAEDSKLKE LVGLYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRK  120
AFSEEEEERL MAAHGLYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSSAFRRRKM  180
AQSLHHHTRS MEELKTEPPP PPPPPQPYCV NFSNGFCAQQ QSSGFLTASL TEPSSSVTEE  240
DREATHFTAP TTTAAPTFID FLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32661676107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062029.13e-93transcription factor MYB105-like
SwissprotQ9SEZ41e-74MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2R6RFH01e-139A0A2R6RFH0_ACTCH; Transcription factor like
STRINGGorai.013G086400.11e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-76myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]