PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn181331

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ERF

Protein Properties

Length: 888aa MW: 96953.8 Da PI: 8.2367

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn181331	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62	1.3e-19	743	793	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrd ++ ++r++lg+f+t+ eAa a+++a+++l+g+ Achn181331 743 HFRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPIEAALAYDEAARSLRGH 793 69*****.******883....5************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12819	3.7E-66	172	506	IPR024788	Malectin-like carbohydrate-binding domain
SuperFamily	SSF52058	1.64E-25	513	656	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	5.1E-29	513	656	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF13855	4.7E-8	586	646	IPR001611	Leucine-rich repeat
PROSITE profile	PS51032	21.509	743	800	IPR001471	AP2/ERF domain
SMART	SM00380	5.1E-34	743	806	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.7E-30	743	800	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.92E-20	743	800	IPR016177	DNA-binding domain
Pfam	PF00847	1.7E-12	743	793	IPR001471	AP2/ERF domain
CDD	cd00018	4.70E-28	743	800	No hit	No description
PRINTS	PR00367	2.9E-8	744	755	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-8	766	782	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence Send to blast
MQRGRAADVS SVDSLSFSGL VCIQDQCSDP KTCPVGPPRP TKQDPRSKFD CVTPSSTNGP 60 PSNVSLADVL GCVRTKDSLL PPRGSSKRST DKGLGLVDKA AKKTNKNRSN GNRSFGQRIS 120 KPFSVLCRSC QVIEPSQPSL TTKHFALSIG LQLSYFILKI FLLDAAPYAL RISCGARNDV 180 HSPPTNTLWN KDFAYTGGIP TNGTRPSFIT PPLQTLRYFP LSDGPENCYN INRVPKGHYS 240 VRIFFGLVSE PNFDNEPLFD VSVEGTQIYS LQSGWSNHDD EQIFVEALIF LTDGSASLCF 300 HSTGHGDPAI LSIEILQVDD RAYNFGPQFG QGTILRTDRR LSCGAEKPRF DVDYSGDHWG 360 GDRFWNPITT FGQRSDRTIT TKSSIKQSSN SPNFYPEALY QTALASTNNQ PDLEYTMDVD 420 PNRNYSIWLH FAEIDPLVTS TGQRVFDILI NGDVTFQDVD IANMSGDINT AFVLNKTIAV 480 NGRTLTITMH PTKGHALINA VEIFEVIVAE SKTLPDEVRA LQTLKSALGL PLRFGWNGDP 540 CVPQQHPWSG ADCQFDRTSS KWVIDGLGLD NQGLRGLLPN DMSKLRHLQS INLSGNSIRG 600 PIPSSLGAVT SLEKLDLSYN FFNGSIPESL GQLTSLQILN LNGNSLSGRV PAALGGRLLH 660 RASFNFTDNA GLCGIPGLPT CGPHLSLGAK IGIASGSCVA LLLIFTCLMC WWKRRQNILR 720 AQRIADLSFR GLNGVGLDLR LGHFRGVRKR PWGRYAAEIR DPWKKTRVWL GTFDTPIEAA 780 LAYDEAARSL RGHKAKTNFP SPPRQPELSL NLHSPTPACR PIGHFLRTGV LTEDMGSVDN 840 ASVNDGPFAS VSGEGTVPEI SSPAGYFGIV RRGLPIDLND PPPLWLG*

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence Send to blast

MQRGRAADVS SVDSLSFSGL VCIQDQCSDP KTCPVGPPRP TKQDPRSKFD CVTPSSTNGP  60
PSNVSLADVL GCVRTKDSLL PPRGSSKRST DKGLGLVDKA AKKTNKNRSN GNRSFGQRIS  120
KPFSVLCRSC QVIEPSQPSL TTKHFALSIG LQLSYFILKI FLLDAAPYAL RISCGARNDV  180
HSPPTNTLWN KDFAYTGGIP TNGTRPSFIT PPLQTLRYFP LSDGPENCYN INRVPKGHYS  240
VRIFFGLVSE PNFDNEPLFD VSVEGTQIYS LQSGWSNHDD EQIFVEALIF LTDGSASLCF  300
HSTGHGDPAI LSIEILQVDD RAYNFGPQFG QGTILRTDRR LSCGAEKPRF DVDYSGDHWG  360
GDRFWNPITT FGQRSDRTIT TKSSIKQSSN SPNFYPEALY QTALASTNNQ PDLEYTMDVD  420
PNRNYSIWLH FAEIDPLVTS TGQRVFDILI NGDVTFQDVD IANMSGDINT AFVLNKTIAV  480
NGRTLTITMH PTKGHALINA VEIFEVIVAE SKTLPDEVRA LQTLKSALGL PLRFGWNGDP  540
CVPQQHPWSG ADCQFDRTSS KWVIDGLGLD NQGLRGLLPN DMSKLRHLQS INLSGNSIRG  600
PIPSSLGAVT SLEKLDLSYN FFNGSIPESL GQLTSLQILN LNGNSLSGRV PAALGGRLLH  660
RASFNFTDNA GLCGIPGLPT CGPHLSLGAK IGIASGSCVA LLLIFTCLMC WWKRRQNILR  720
AQRIADLSFR GLNGVGLDLR LGHFRGVRKR PWGRYAAEIR DPWKKTRVWL GTFDTPIEAA  780
LAYDEAARSL RGHKAKTNFP SPPRQPELSL NLHSPTPACR PIGHFLRTGV LTEDMGSVDN  840
ASVNDGPFAS VSGEGTVPEI SSPAGYFGIV RRGLPIDLND PPPLWLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-20	734	800	5	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028077067.1	0.0	receptor-like protein 4 isoform X1
Swissprot	F4HWL3	0.0	RLP4_ARATH; Receptor-like protein 4
TrEMBL	A0A2R6RAP7	0.0	A0A2R6RAP7_ACTCH; Leucine-rich repeat receptor-like serine/threonine-protein kinase
STRING	VIT_10s0003g00120.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28360.1	7e-38	ERF domain protein 12

Publications ? help Back to Top
Kobe B,Kajava AV The leucine-rich repeat as a protein recognition motif. Curr. Opin. Struct. Biol., 2001. 11(6): p. 725-32 [PMID:11751054] Fritz-Laylin LK,Krishnamurthy N,Tör M,Sjölander KV,Jones JD Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis. Plant Physiol., 2005. 138(2): p. 611-23 [PMID:15955925] Wang G, et al. A genome-wide functional investigation into the roles of receptor-like proteins in Arabidopsis. Plant Physiol., 2008. 147(2): p. 503-17 [PMID:18434605]