PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn180141

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 729aa MW: 79667.7 Da PI: 6.2065

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn180141	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	412.1	4.9e-126	354	714	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lLl+cAeavs++++e+a+++L ++s+l++p g++ qR+aayf eA++arl++s+ e+y alp +++ ++ +++++a+++f+ +sP++kfsh+taNq Achn180141 354 LTLLLDCAEAVSADNFEEANKMLIEISQLSTPFGTSAQRVAAYFSEAMSARLVNSCLEMYGALPFRAALQY-NQKAVSAFQVFNGISPLVKFSHFTANQ 451 579*************************************************************99855.56677999*************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 aI ea+e e+rvHiiD+di+qGlQWp L++ La+Rp+gpp +R+Tg+g s e+le+tg+rL++fA++lg+pfef + +++++ +l++e+L+v+++ Achn180141 452 AIQEAFELEDRVHIIDLDIMQGLQWPGLFHILATRPGGPPFVRLTGLGT----SMEALEATGKRLSDFAHKLGLPFEFFP-IVEKVGNLDPERLNVSKR 545 *********************************************....***********************.799*********** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 Ea+a+++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++ll+rei+nv+ Achn180141 546 EAVAIHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVL 637 ****9..999999999999....******************.899****************************************** PP GRAS 299 acegaerr.erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 a g +r + +++++Wre++e++GFk v+l +a++qa lll +++sdgy++ ee+g+l lgWkd L+++SaWr Achn180141 638 AVGGPSRSgDQVNKFNNWREKFEQSGFKGVSLAGNATAQATLLLGMFPSDGYTLVEENGTLKLGWKDLCLLTASAWR 714 *987256799************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.33	327	694	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-123	354	714	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MSAFGLLGDN GGHAPSNRAN GIRTRESPLT SAFGSNITVN PLSSYHLAAS DGKMVRKRSA 60 SEIEQIHNNR FLRPLVAPPD SIGCPVLPLA ASNSIIPVGD NPHFNHSTIQ ASLPNLSAPS 120 RASGPGFSTT CLAYLDPQLS PHPNPNPDPS VCVFSGLPVF PSERRRNSSN NAPVEVLPVS 180 PAAEVSAMED TTMATAWIDA IIKDLIHSST PHVSIPLLIH NVREIIHPCN PHLASLLEYR 240 LRSLVTPPDP GQTQHHDHQP SPDFPYLPLS DSAATNQHYL NQQSSQSQAQ QQQQQQPQQD 300 SSPSHDLIAM TTATTTHEPA LGAPPPSITT TTTREKEREE MRRQKRDEEG LHLLTLLLDC 360 AEAVSADNFE EANKMLIEIS QLSTPFGTSA QRVAAYFSEA MSARLVNSCL EMYGALPFRA 420 ALQYNQKAVS AFQVFNGISP LVKFSHFTAN QAIQEAFELE DRVHIIDLDI MQGLQWPGLF 480 HILATRPGGP PFVRLTGLGT SMEALEATGK RLSDFAHKLG LPFEFFPIVE KVGNLDPERL 540 NVSKREAVAI HWLQHSLYDV TGSDTNTLWL LQRLAPKVVT VVEQDLSHAG SFLGRFVEAI 600 HYYSALFDSL GASYGEESEE RHVVEQQLLS REIRNVLAVG GPSRSGDQVN KFNNWREKFE 660 QSGFKGVSLA GNATAQATLL LGMFPSDGYT LVEENGTLKL GWKDLCLLTA SAWRPVPTFH 720 YPISSLAS*

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MSAFGLLGDN GGHAPSNRAN GIRTRESPLT SAFGSNITVN PLSSYHLAAS DGKMVRKRSA  60
SEIEQIHNNR FLRPLVAPPD SIGCPVLPLA ASNSIIPVGD NPHFNHSTIQ ASLPNLSAPS  120
RASGPGFSTT CLAYLDPQLS PHPNPNPDPS VCVFSGLPVF PSERRRNSSN NAPVEVLPVS  180
PAAEVSAMED TTMATAWIDA IIKDLIHSST PHVSIPLLIH NVREIIHPCN PHLASLLEYR  240
LRSLVTPPDP GQTQHHDHQP SPDFPYLPLS DSAATNQHYL NQQSSQSQAQ QQQQQQPQQD  300
SSPSHDLIAM TTATTTHEPA LGAPPPSITT TTTREKEREE MRRQKRDEEG LHLLTLLLDC  360
AEAVSADNFE EANKMLIEIS QLSTPFGTSA QRVAAYFSEA MSARLVNSCL EMYGALPFRA  420
ALQYNQKAVS AFQVFNGISP LVKFSHFTAN QAIQEAFELE DRVHIIDLDI MQGLQWPGLF  480
HILATRPGGP PFVRLTGLGT SMEALEATGK RLSDFAHKLG LPFEFFPIVE KVGNLDPERL  540
NVSKREAVAI HWLQHSLYDV TGSDTNTLWL LQRLAPKVVT VVEQDLSHAG SFLGRFVEAI  600
HYYSALFDSL GASYGEESEE RHVVEQQLLS REIRNVLAVG GPSRSGDQVN KFNNWREKFE  660
QSGFKGVSLA GNATAQATLL LGMFPSDGYT LVEENGTLKL GWKDLCLLTA SAWRPVPTFH  720
YPISSLAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	0.0	338	715	3	379	Protein SCARECROW
5b3h_D	0.0	338	715	3	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042769	2e-46	BT042769.1 Zea mays full-length cDNA clone ZM_BFc0038F13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028085361.1	0.0	protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A2R6RXP3	0.0	A0A2R6RXP3_ACTCH; Protein SCARECROW like
STRING	VIT_08s0056g00050.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8258	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein