PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn178041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | G2-like | ||||||||
Protein Properties | Length: 226aa MW: 24600.4 Da PI: 6.5551 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 38.3 | 2.9e-12 | 30 | 54 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt +LH+rFv+av++LGG++ Achn178041 30 KPRLRWTADLHDRFVDAVTKLGGPD 54 79*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-11 | 27 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-8 | 30 | 55 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 3.1E-25 | 82 | 129 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDRGYGGGGG GGGGSQYGFE SGVVVSRDPK PRLRWTADLH DRFVDAVTKL GGPDSGSYRD 60 YNVYSSGATT SSSGVNSEPG EMPIAEALRY QIEVQKRLQE QLEVQKKLQM RIEAQGKYLQ 120 SILEKAQKSP TLDMNCSGSL EATRSQLTNF NLALSNLMEN MDGESRNGNI TEKKILEDIH 180 KNANRSLYLG KEEENKAIKF RIGGGSINFD LNTRGSYDFI GASGI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028080374.1 | 1e-104 | myb family transcription factor PHL11 isoform X1 | ||||
TrEMBL | A0A2R6PHX9 | 1e-136 | A0A2R6PHX9_ACTCH; Myb family transcription factor | ||||
STRING | Solyc08g076010.2.1 | 4e-75 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 4e-31 | G2-like family protein |