PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn177851

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 427aa MW: 48060.1 Da PI: 4.6857

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn177851	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	36.3	1.1e-11	201	241	4	44
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 ++ledl+ +F + +d Ak Lgv++++ Kr+CR++GIk W Achn177851 201 VLTLEDLQPHFGRKRADDAKILGVSVSTFKRRCRHNGIKHW 241 689*************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.705	185	273	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-11	202	241	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.1E-18	333	421	No hit	No description
SMART	SM00666	6.7E-21	337	419	IPR000270	PB1 domain
PROSITE profile	PS51745	19.325	337	419	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-18	338	416	No hit	No description
Pfam	PF00564	1.7E-17	338	418	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MGSSEFTQIP GELLENLRNA ATFSPQISPR LLNDDYWPPY PTDSVSPLPD DDLFTSSRIY 60 GSLSSLSMAL FDFAQIPGDH QISHGFDDRE LLEHCLDFSP QRSPRFLDDD YLPPSPTDSV 120 SPLPVCSEIH ASSKLLINIL DFPWAAIEED LDFSRAPIEE ERSVEIINPS EKLDSMQLDS 180 SEQLMKNAME TRERKCGTKR VLTLEDLQPH FGRKRADDAK ILGVSVSTFK RRCRHNGIKH 240 WNGSECSRSL ELDPKHRETP GEKTTPPCKT PSVIGWAKTG NQVLDNSIVE IEGNLHEQNR 300 FQTENVLKEV EAAVSEGDSK RNWPMLSCFD PAPKQSIVTI KATYGEDTVK FDLASTPRIV 360 ELMEEVAKRL ELESGSFKVK YQDEDQEWIL IACDADFQRC LKFSSSLGNP FIRLLVVAKV 420 SYFGKS*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MGSSEFTQIP GELLENLRNA ATFSPQISPR LLNDDYWPPY PTDSVSPLPD DDLFTSSRIY  60
GSLSSLSMAL FDFAQIPGDH QISHGFDDRE LLEHCLDFSP QRSPRFLDDD YLPPSPTDSV  120
SPLPVCSEIH ASSKLLINIL DFPWAAIEED LDFSRAPIEE ERSVEIINPS EKLDSMQLDS  180
SEQLMKNAME TRERKCGTKR VLTLEDLQPH FGRKRADDAK ILGVSVSTFK RRCRHNGIKH  240
WNGSECSRSL ELDPKHRETP GEKTTPPCKT PSVIGWAKTG NQVLDNSIVE IEGNLHEQNR  300
FQTENVLKEV EAAVSEGDSK RNWPMLSCFD PAPKQSIVTI KATYGEDTVK FDLASTPRIV  360
ELMEEVAKRL ELESGSFKVK YQDEDQEWIL IACDADFQRC LKFSSSLGNP FIRLLVVAKV  420
SYFGKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6PHT9	1e-166	A0A2R6PHT9_ACTCH; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-25	Nin-like family protein