PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn177251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family BES1
Protein Properties Length: 1114aa    MW: 124625 Da    PI: 7.4046
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn177251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822150.11.8e-465346681134
      DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.ssl 98 
                 g++grk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+re Gw+ve+DGttyr +  p+  ++++g +  +s+ s+l+  sl
  Achn177251 534 GAKGRKEREKEKERTKLRERHRRAITSRLLAGLRQYGNFPLPARADMNDVLAALARESGWTVEPDGTTYRSS--PP--PSQMGVFPVRSVGSPLSaGSL 628
                 689*******************************************************************44..43..46899999999999999999* PP

      DUF822  99 kssalaspvesysaspksssfpspssldsislasa....a 134
                 k++++++ ++ + + ++ ++++sp+sldsi +a+     +
  Achn177251 629 KNCSMKASLDCQPSILRIEESLSPASLDSIVVAERdtksE 668
                 *******************************998753330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.6E-47536677IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514456.95E-1477001110IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.808.2E-1537031111IPR013781Glycoside hydrolase, catalytic domain
PRINTSPR007501.0E-39740754IPR001554Glycoside hydrolase, family 14
PfamPF013736.9E-577811075IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-39854876IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-39927946IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-39961977IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-39978989IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-399961019IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-3910341056IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MLLQQYHHLL DHHQGLFSLG QYCYRAKGMI KENGFHGPSA NQNKSEAHQV KAECYSKVKA  60
EQPDETACIS SSNEYDEWGQ SNLSDLDSRA GSSSSRAFST RSLDPPSRSL SCFKFFPGNS  120
SCRLSRATSL GSSRADPPSS TSFTVSNDEE QHHVHIDPAR GLVNRNVFSR GRAFLPACLI  180
NSSPSRQLDD FASGSLESNP TSVFFDNLRD DQITSALNVV ARDADNPRGE FNVNLFSLRN  240
HTDIESMETT RLADRRIGAR EPVERNVRFS RTLSVGRLRD RVLRRSAFPD LTFSALQQER  300
EVRDASQPGG TQALGGGTGL LASNENALIS SSPSIYASSG MPSSFYSSQD SEVETSRARD  360
TSYHDLLEHR SNFLERRRRI RSQRLGSRFE NLSGHERSCI ISGQHRTGHC TCPIRTRDAN  420
SIDDTSARAS ISRIVMLAEA LFEVLDEIHQ QSVVLSSQPS VSPIGSVPAP IEVVESLPVK  480
LYSKSQKHLN EEAAHGICIG RKKWYRRDKL VHRRPRGFAA AAAASMGAAA VGGGAKGRKE  540
REKEKERTKL RERHRRAITS RLLAGLRQYG NFPLPARADM NDVLAALARE SGWTVEPDGT  600
TYRSSPPPSQ MGVFPVRSVG SPLSAGSLKN CSMKASLDCQ PSILRIEESL SPASLDSIVV  660
AERDTKSEKY TSASPINSPE CLGADQLMDD VGSRVHGADF TGTPYVPVYV MLAASVITNL  720
CQLIDPEGVR QELRHLKSLH VDGVVVDCWW GIVEGWSPQK YEWSGYRELF TIIREFQLKL  780
QWVLEIGKEN PDIFFTDREG RRNTECLSWG IDKERVLKGR TGIEVYFDFM RSFRSEFDDL  840
FTEGLISAVE IGLGASGELK YPSFSERMGW RYPGIGEFQC YDKYSQQNLR KAAKLRGHSF  900
WARGPDNAGQ YNSRPHETGF FCERGDYDSY YGRFFLHWYA QSLIDHADNV LYLASLAFED  960
TRLVVKIPAV YWWYKTTSHA AELTAGYYNP TNQDGYAPVF EILKKHSVTM KFVWSGLQVP  1020
CQETDEALAD PEGLSWQLLN SAWDRGLTVA GQNADPCYDK GGYMRIVEIA KPRNDPDHRH  1080
FLFFVHQQPS SFAQGTICLP ELDYFVKSMH GMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-106705107311401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7394640.0KP739464.1 Camellia sinensis beta-amylase 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118849.10.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1S5RRY90.0A0A1S5RRY9_ACTDE; Beta-amylase
STRINGXP_010275178.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]