PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn176791
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 581aa    MW: 64630.5 Da    PI: 5.8409
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn176791genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.52.9e-1282105791373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+++s+++    ++l+ + +  +s +g+p+qRl ay++eAL ar   s+s++y++ +++e +    ++ l+++++++e++P+lkf++++aN
  Achn176791 210 LKQLLIACAKVLSENKIDDFDNLIDKARSAVSVSGEPIQRLGAYLVEALVARKEASGSNIYRSQRCKEPE---GKDLLSYMQILYEICPYLKFGYMAAN 305
                 689*****************************************************************99...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p ++  + ++l ++++ L+ + +++++p+ef++ v     d+++++L+v
  Achn176791 306 GAIADACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVNQyaRGDSLAAVENHLKVISDKFNIPVEFHA-VPVFAPDVTMDMLDV 403
                 ***************************************************999999**************************.688899********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEal Vn+ lqlh+++desv+++++rd +L++vksl+Pkvv++veqe+++n+++F++rf+e+l++ysa+f+s++++l r+s+eri+vE+++l+r+iv
  Achn176791 404 RPGEALTVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLNPKVVTLVEQESNTNTAPFVARFVETLNFYSAMFESIDVTLLRDSKERINVEQHCLARDIV 502
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 n++aceg+er+erhe ++kW++r+++aGF+++pl +++++ ++ ll+ ++ + y++ee++g+++lgWkdr+Lvs+SaW
  Achn176791 503 NIIACEGKERVERHELFGKWKSRFTMAGFRQYPLVSYVNSVIRGLLKCYS-EHYTLEEKDGAMLLGWKDRNLVSASAW 579
                 **********************************************9988.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.644184561IPR005202Transcription factor GRAS
PfamPF035149.8E-126210579IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDSSQFFGYG VTGADLSYSS HPNVPSVPAR MSEILKFCSR NSPNSPFSTH FDSENLATLS  60
DSQEQHSSTE NLSGASPSYN SSLGSNNYCQ QSSPSLGCRQ NSLLLHFGET SFLQDDNIKY  120
ALQELETTLM APDEEEEVAT PSPSLGENKR PQTSGQRSMA WSQEPQGSHV AQSQSSHSSR  180
YGKSNDRFRS EKRHKSMEDA SLQGIPPGNL KQLLIACAKV LSENKIDDFD NLIDKARSAV  240
SVSGEPIQRL GAYLVEALVA RKEASGSNIY RSQRCKEPEG KDLLSYMQIL YEICPYLKFG  300
YMAANGAIAD ACRNEDRIHI IDFQIAQGTQ WMTLLQALAA RPSGAPHVRI TGIDDPVNQY  360
ARGDSLAAVE NHLKVISDKF NIPVEFHAVP VFAPDVTMDM LDVRPGEALT VNFPLQLHHT  420
PDESVDVNNP RDGLLRMVKS LNPKVVTLVE QESNTNTAPF VARFVETLNF YSAMFESIDV  480
TLLRDSKERI NVEQHCLARD IVNIIACEGK ERVERHELFG KWKSRFTMAG FRQYPLVSYV  540
NSVIRGLLKC YSEHYTLEEK DGAMLLGWKD RNLVSASAWH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-6023758030375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126203.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2R6QDF00.0A0A2R6QDF0_ACTCH; Chitin-inducible gibberellin-responsive protein
STRINGGorai.002G080600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-173GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]