PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn176741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 227aa MW: 26233.7 Da PI: 6.5094 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.2 | 2.3e-07 | 41 | 101 | 28 | 88 |
FAR1 28 itkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 + +++ +egkr+++k++ + ++r+etr gC a +kvk + ++++ v +l+ Hn Achn176741 41 FFNNNVPIEEEGKRRKDKRD-HMYTSHRPETRFGCLAWMKVKYCRpTEQFDVVELNPVHNYI 101 55555556789999999999.89999*******************9**************75 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEIEINYSSP LSCEVLDIDG NYARDDCDFR RKLEFKDDDN FFNNNVPIEE EGKRRKDKRD 60 HMYTSHRPET RFGCLAWMKV KYCRPTEQFD VVELNPVHNY IVSTPSKTHL HKSHRKFGVA 120 QAAIVNMEND CGIAPKATVA FMARQVGGRE NLGFIPQDYK NYLRSKRTMQ MKIGDTSGVL 180 EYLQKMQLQD PNFFYAIQVD EDDLITNIFW ADAKNDGRLG LLWGCG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021817174.1 | 3e-68 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024164275.1 | 2e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2R6QX94 | 1e-107 | A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | XP_008246048.1 | 1e-64 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-22 | FAR1-related sequence 5 |