PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn176481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 412aa    MW: 45334.7 Da    PI: 4.8135
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn176481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.2e-06434535
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                +C+ ++e++ + +C+++   lC +C  + H+
  Achn176481  4 MCDFCGEQRSIVYCRSDAASLCFSCDHSVHS 34
                6***************************995 PP
2zf-B_box22.62.2e-074788540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +C++++++++ + C + +  lC++C   +H g      H+++
  Achn176481 47 VCDRCNSQPAFIRCVTEKISLCQNCDWLGHAGstsasrHQRQ 88
                8*****************************888888888765 PP
3CCT60.26.8e-21354397144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R  a+lRYkeK+  RkF+Kk+rY+sRKa+A+ R RvKGrFvk+ 
  Achn176481 354 RSDAVLRYKEKKAARKFDKKVRYASRKARADVRRRVKGRFVKAG 397
                 889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.556147IPR000315B-box-type zinc finger
SMARTSM003361.6E-7147IPR000315B-box-type zinc finger
CDDcd000211.69E-5447No hitNo description
CDDcd000213.11E-44788No hitNo description
SMARTSM0033624890IPR000315B-box-type zinc finger
PROSITE profilePS5101714.882354396IPR010402CCT domain
PfamPF062031.9E-15354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MVYMCDFCGE QRSIVYCRSD AASLCFSCDH SVHSANALSR RHFRTLVCDR CNSQPAFIRC  60
VTEKISLCQN CDWLGHAGST SASRHQRQAV NCYSGCPSSA ELSTIWPFVS DIPSVGDSTC  120
EKEMSSMRIS DKSVTNCGDS LQSKDGQDVS VLVKVNDVNN IDKSSFWMES SSMPQLNIKS  180
KIVDQPVGLA NSTSSKMFCP GTKGPAYCED DGFYEDFNMD EVDLNIENYD ELFGIALNNP  240
EQLFGNDEID SLFGVKDMPG ADLKCQGTSA AEGSSIGQDN VVQPACSNTV FADYVMSSKT  300
EPNLCFWTSL SFSGLTGESS VGDYQDCSAS SILLMEEPPW CPQCPESSLP STCRSDAVLR  360
YKEKKAARKF DKKVRYASRK ARADVRRRVK GRFVKAGDDY DYDPLSQTRS C*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121845.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-130COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2R6PTT10.0A0A2R6PTT1_ACTCH; Zinc finger protein like
STRINGVIT_12s0057g01350.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-110CONSTANS-like 9