PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn175411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GATA | ||||||||
Protein Properties | Length: 180aa MW: 19887.2 Da PI: 10.4106 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.3 | 1.4e-20 | 63 | 96 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR+gp g+k+LCnaCG++yrkk+ Achn175411 63 CADCKTTKTPLWRSGPVGPKSLCNACGIRYRKKR 96 ********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.7E-16 | 57 | 106 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.914 | 57 | 111 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-13 | 59 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-16 | 61 | 99 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.88E-13 | 62 | 92 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 63 | 88 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-18 | 63 | 96 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MVINVGSRIL VDVVCQQIFI QGCFGHFIYL TRIRVFVFVD PATEHFLSES VSEEMMSESK 60 KSCADCKTTK TPLWRSGPVG PKSLCNACGI RYRKKRNEKE KKKEKPATNT SNSGGGGSGK 120 VGNLSEDLRV RLVALGKEVV MLQRRQRSPM KRQRTSRKLG EEEQAAVLLM ALSCGSVFA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 158 | RRQRSPMKRQRTSRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028086304.1 | 7e-52 | GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 6e-34 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A2R6RD72 | 3e-87 | A0A2R6RD72_ACTCH; GATA transcription factor | ||||
STRING | PGSC0003DMT400063771 | 2e-44 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12750 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 4e-25 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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