PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn175111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 654aa    MW: 73715.7 Da    PI: 4.368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn175111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS119.34.9e-372826522374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 v+l+ +  eav+ ++ ela+ + +r++e++sp g  m+Rl  y+ + L ++ +            +++s    ++   a+k+f+e++P+ kf++++aN 
  Achn175111 282 VHLVKAYGEAVDGEQGELAEVIAERIRERVSPVGGVMERLLCYLFQPLDKQAFY----------LKQES---GKNFRVAFKAFYEIFPYGKFAYFAANL 367
                 6777788899**************************************999987..........44444...677888999****************** PP

        GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..el 191
                  Il+a+  + e +HiiDfd++ G+QW ++++a+  +   + ++R+T ++ +e +      + + eet++ L + A+++g+++  + +   +l+dl  e+
  Achn175111 368 EILKALPCDvEVIHIIDFDMGAGIQWSSIIEAIGGQ---KREIRLTSIKWSEGDynsdpTRWMFEETKRWLCDHARTFGLKLTVDSM---ELHDLvsEI 460
                 *******998899********************964...667******9977668888888899*********************97...566662234 PP

        GRAS 192 eeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvvvvveqe..adhnse.sFlerflealeyysalfdsleakl 275
                 ++++ +   +  la n+++ l ++    v + +  +e+L + k+l          +  ++++ + +  a+ ns  sF   +   l ++ al++s+e ++
  Achn175111 461 KKMKKNGgrRTWLAFNCMVGLPHMG--MVRSWKDVSEFLGAAKELlaytaifscnNTGIITLGDGDtwAESNSYsSFGSFLDGHLVHCQALLESIEWTF 557
                 444444366899***********98..444444578999999998555555544456788888888655665542566666668*************** PP

        GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSa 372
                 p    e+r+ +E +++++ ++++   +++e   ++e     ++r++  G +  + s  +ak++ +  ++ +  g ++e e+++++vl W + pLv vS+
  Achn175111 558 PIRLgEARTALEVFFVAPLVSSIARIRKRE---EME-CCDFQSRFGLEGWQVCKESLVEAKEMMRAGENLY--GVKIEgENNNCMVLKWGEIPLVRVSC 650
                 *99867788888886666666655555554...444.5567777766666666655555555555555555..899998899***************** PP

        GRAS 373 Wr 374
                 Wr
  Achn175111 651 WR 652
                 *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF695728.63E-163117IPR000594THIF-type NAD/FAD binding fold
PfamPF161917.7E-15962IPR032420Ubiquitin-activating enzyme E1, four-helix bundle
Gene3DG3DSA:3.40.50.7201.5E-1411118IPR016040NAD(P)-binding domain
PROSITE patternPS005360106114IPR018074Ubiquitin-activating enzyme E1, conserved site
PROSITE profilePS5098516.442255633IPR005202Transcription factor GRAS
PfamPF035141.7E-34282652IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008641Molecular Functionsmall protein activating enzyme activity
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MQETLTHRGD FLLSDFSKFD HPPLIHLALQ ALDKFISELG RFPIAGSEED AHELISLATD  60
INNSSADERL EEIDPKLLRN FAFGAKAVLN PIAAMFDCIV GQEVVKACSG KFHPLFQEST  120
QNFQAFFSLL TTMQPDFLQY SSWSSFSNRN SLFDEFGDYG LFMDNAVDCY EFSPPLTVSD  180
DSDNSIISIF LSTFPDQFMD LPVLAESDFS IALDDFVIED MSEPLDESDK SCPQWLSMDG  240
EDGWSLSSLV NSSDRSTDMS LIHASLTLPT EDVDLCNELS LVHLVKAYGE AVDGEQGELA  300
EVIAERIRER VSPVGGVMER LLCYLFQPLD KQAFYLKQES GKNFRVAFKA FYEIFPYGKF  360
AYFAANLEIL KALPCDVEVI HIIDFDMGAG IQWSSIIEAI GGQKREIRLT SIKWSEGDYN  420
SDPTRWMFEE TKRWLCDHAR TFGLKLTVDS MELHDLVSEI KKMKKNGGRR TWLAFNCMVG  480
LPHMGMVRSW KDVSEFLGAA KELLAYTAIF SCNNTGIITL GDGDTWAESN SYSSFGSFLD  540
GHLVHCQALL ESIEWTFPIR LGEARTALEV FFVAPLVSSI ARIRKREEME CCDFQSRFGL  600
EGWQVCKESL VEAKEMMRAG ENLYGVKIEG ENNNCMVLKW GEIPLVRVSC WRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dc6_A2e-1710117271379Ubiquitin-like modifier-activating enzyme 1
6dc6_C2e-1710117271379Ubiquitin-like modifier-activating enzyme 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1802992e-92JN180299.1 Camellia sinensis ubiquitin activating enzyme E1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057264.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2R6RRQ40.0A0A2R6RRQ4_ACTCH; Nodulation-signaling pathway 2 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-18GRAS family protein