PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn174371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 515aa MW: 57008.4 Da PI: 6.2899 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 360.9 | 1.9e-110 | 145 | 513 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lL++cAeav+ +d++ a+ lL++l+ a g+++qR+a++f+++La rla + + ++ + p+ ++ +e+ al+l +e++P ++f+h++aN Achn174371 145 FHLLISCAEAVACRDKSYASVLLSKLRASALVFGSSFQRVASCFVQGLADRLALVHPlGAVRFIMPTIM-NSVLDEKEEALRLVYEICPHIQFGHFVAN 242 69***************************************************9443133333344333.356899999******************** PP GRAS 100 qaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +Ilea+ege+ vH++D+++s +G QW L+q+Las +++pp lRiT vg e+ + +g+ L+ +A++lg+++ef++ ++++le+l++e+ Achn174371 243 ATILEAFEGESFVHVVDLGMSlglpHGHQWRHLIQSLASCSGQPPiCLRITSVGL----FVEQFQIIGDELKTYAQTLGINLEFSI-IESNLENLKPEH 336 *****************99874444678*************999989********....99************************9.799********* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++ + +E+l+Vn++lqlh +++es + ++L+++ +lsPk +v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E++++++ Achn174371 337 IKHHDNEVLVVNSILQLHCVVKESRGALN---SFLQIIHELSPKALVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFFFAE 432 *********************88877777...8****************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p p++ +++qak l ++k +dgy++ ee+g+lvlgWk++p+v++S+W+ Achn174371 433 EIKNIVSCEGPARVERHEKVDQWRRRMSRAGFQPSPIK--MVAQAKQWLGNIKdGDGYTIVEEKGCLVLGWKSKPIVAASCWK 513 ************************************96..688***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.993 | 118 | 494 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.4E-108 | 145 | 513 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MAQSLLSCDL CSEERVDDAS GLDLSLSAMA YYPYPYLPIL ETTASTWFPT VSGESGSHKR 60 LKRTASVPEL ALASVSFSHG QGLISRNSST NSLNTFPGLQ FRDHILTYAQ KYLAAEAVEE 120 VAAAIIGSEN GKAEEDGSGD EMRLFHLLIS CAEAVACRDK SYASVLLSKL RASALVFGSS 180 FQRVASCFVQ GLADRLALVH PLGAVRFIMP TIMNSVLDEK EEALRLVYEI CPHIQFGHFV 240 ANATILEAFE GESFVHVVDL GMSLGLPHGH QWRHLIQSLA SCSGQPPICL RITSVGLFVE 300 QFQIIGDELK TYAQTLGINL EFSIIESNLE NLKPEHIKHH DNEVLVVNSI LQLHCVVKES 360 RGALNSFLQI IHELSPKALV LVEQDSSHNG PFFLGRFMEA LHYYSAIFDS LDAMLPKYDT 420 RRAKIEQFFF AEEIKNIVSC EGPARVERHE KVDQWRRRMS RAGFQPSPIK MVAQAKQWLG 480 NIKDGDGYTI VEEKGCLVLG WKSKPIVAAS CWKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-57 | 151 | 512 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-57 | 151 | 512 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-57 | 151 | 512 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028063309.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2R6PS62 | 0.0 | A0A2R6PS62_ACTCH; DELLA protein | ||||
STRING | XP_009359535.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-80 | RGA-like 1 |