PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn174371
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 515aa    MW: 57008.4 Da    PI: 6.2899
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn174371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.91.9e-1101455132374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +lL++cAeav+ +d++ a+ lL++l+  a   g+++qR+a++f+++La rla   + + ++ + p+   ++  +e+  al+l +e++P ++f+h++aN
  Achn174371 145 FHLLISCAEAVACRDKSYASVLLSKLRASALVFGSSFQRVASCFVQGLADRLALVHPlGAVRFIMPTIM-NSVLDEKEEALRLVYEICPHIQFGHFVAN 242
                 69***************************************************9443133333344333.356899999******************** PP

        GRAS 100 qaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  +Ilea+ege+ vH++D+++s    +G QW  L+q+Las +++pp  lRiT vg       e+ + +g+ L+ +A++lg+++ef++ ++++le+l++e+
  Achn174371 243 ATILEAFEGESFVHVVDLGMSlglpHGHQWRHLIQSLASCSGQPPiCLRITSVGL----FVEQFQIIGDELKTYAQTLGINLEFSI-IESNLENLKPEH 336
                 *****************99874444678*************999989********....99************************9.799********* PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 ++ + +E+l+Vn++lqlh +++es    +   ++L+++ +lsPk +v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++
  Achn174371 337 IKHHDNEVLVVNSILQLHCVVKESRGALN---SFLQIIHELSPKALVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFFFAE 432
                 *********************88877777...8****************************************************************** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p p++  +++qak  l ++k +dgy++ ee+g+lvlgWk++p+v++S+W+
  Achn174371 433 EIKNIVSCEGPARVERHEKVDQWRRRMSRAGFQPSPIK--MVAQAKQWLGNIKdGDGYTIVEEKGCLVLGWKSKPIVAASCWK 513
                 ************************************96..688***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.993118494IPR005202Transcription factor GRAS
PfamPF035146.4E-108145513IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MAQSLLSCDL CSEERVDDAS GLDLSLSAMA YYPYPYLPIL ETTASTWFPT VSGESGSHKR  60
LKRTASVPEL ALASVSFSHG QGLISRNSST NSLNTFPGLQ FRDHILTYAQ KYLAAEAVEE  120
VAAAIIGSEN GKAEEDGSGD EMRLFHLLIS CAEAVACRDK SYASVLLSKL RASALVFGSS  180
FQRVASCFVQ GLADRLALVH PLGAVRFIMP TIMNSVLDEK EEALRLVYEI CPHIQFGHFV  240
ANATILEAFE GESFVHVVDL GMSLGLPHGH QWRHLIQSLA SCSGQPPICL RITSVGLFVE  300
QFQIIGDELK TYAQTLGINL EFSIIESNLE NLKPEHIKHH DNEVLVVNSI LQLHCVVKES  360
RGALNSFLQI IHELSPKALV LVEQDSSHNG PFFLGRFMEA LHYYSAIFDS LDAMLPKYDT  420
RRAKIEQFFF AEEIKNIVSC EGPARVERHE KVDQWRRRMS RAGFQPSPIK MVAQAKQWLG  480
NIKDGDGYTI VEEKGCLVLG WKSKPIVAAS CWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5715151226378Protein SCARECROW
5b3h_A2e-5715151225377Protein SCARECROW
5b3h_D2e-5715151225377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063309.10.0DELLA protein RGL1-like
TrEMBLA0A2R6PS620.0A0A2R6PS62_ACTCH; DELLA protein
STRINGXP_009359535.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-80RGA-like 1