PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn174191
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRF
Protein Properties Length: 566aa    MW: 61474.2 Da    PI: 7.7669
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn174191genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.13.1e-23201244144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  Achn174191 201 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVE 244
                 79***************************************997 PP
2QLQ56.67.6e-20133167236
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                 +FT+aQ+ +L++Q+l+yKy++an+PvP++Ll a++
  Achn174191 133 PFTPAQWVELEHQALIYKYIVANVPVPANLLIALR 167
                 8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.7E-11132168IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.083133168IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-14133166IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.619201245IPR014977WRC domain
PfamPF088797.1E-21202244IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGLVGPENGV SNEILPNPEA TKPKSCIGYG FLNQVRSRSG EENLWGSKGA KTDDFDAPKT  60
ILYQRSNSLI SGDGLQNQNM LCFSSSRSEA PSLSKNGGLA ERSSQNLASS YFQHTPYAYS  120
TNAGYGCGGM HWPFTPAQWV ELEHQALIYK YIVANVPVPA NLLIALRRSL NPYGLYGFSG  180
SYAPNSLGSA SFHLRFTGNT DPEPGRCRRT DGKKWRCSRD AVADQKYCER HINRGRHRSR  240
KPVECRTCQA ISGPATKMVP VACSTSASVI SGSGASNSLG THQQDKGLQS ADENTSADVL  300
HNRMPNPQVQ SVVSPTTNLK AKDSPFSIPK QHMPIDKPPQ SEFGLISSDS LFNPSQKTPF  360
MNSRNYTSIL DFNDHESHDQ HPLRHFIDDW PKDQSNHAAI ALPEELKSDW TQRSMSIPMA  420
SSDFSSTLPY SPQEKLALSP LRLSRELDPF QNQSESTQKH TSWIPISWGS SIGGPLGEVL  480
NSAPSTVGPC KDSSDFNLTT RAWNDGPQSE FSPTGVLQKT TFVSLSNSSS GSSPKADKNK  540
TNESGSLGDD ILGSTLASSF SIPSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818755e-34LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132625e-34LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059566.10.0growth-regulating factor 1-like isoform X2
TrEMBLA0A2R6R5C00.0A0A2R6R5C0_ACTCH; Growth-regulating factor like
STRINGVIT_00s0494g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-84growth-regulating factor 1