PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn173251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 323aa    MW: 36267.7 Da    PI: 5.3553
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn173251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-175397147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
       Achn173251 53 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 97
                     89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-2133106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-103360IPR009057Homeodomain-like
PROSITE profilePS500904.173447IPR017877Myb-like domain
PROSITE profilePS5129425.13748102IPR017930Myb domain
SMARTSM007174.8E-1652100IPR001005SANT/Myb domain
PfamPF002491.9E-155397IPR001005SANT/Myb domain
CDDcd001673.76E-125598No hitNo description
Gene3DG3DSA:1.10.10.602.4E-226199IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNNKINKILK LNDLNYQCGP LGGPSTAEAN GLQRCGKSCR LRWTNYLRPD IKRGRFSFEE  60
EETIIQLHSV LGNKWSAIAA RLPGRTDNEI KNYWNTHIRK RLLKMGIDPV THSPRLDLLD  120
LSTILHSAQL NLSNLLSLQT LANPELLRVV TTLLASNHEN SQNVSQKLQE SQIFNTQLQN  180
QNLMTQPNFP MEEIPLNTSS GDPHTSNFNQ TQLAQGMDMG HFPINSTDLN CQNFQENVAP  240
SSLNGNFGTL PNFGQNMFDQ MKTSENLAFD SVISTPMSSP TPLTSSSTFI NSSSTEDERE  300
SYCSNMLKFE IPESFLDFDD FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-213410237105MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-213410237105C-Myb DNA-Binding Domain
1msf_C9e-213410237105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068496.11e-129transcription factor MYB41-like
RefseqXP_028100199.11e-129transcription factor MYB41-like
SwissprotQ9LDR82e-73MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2R6QCA80.0A0A2R6QCA8_ACTCH; Transcription factor like
STRINGXP_010277911.11e-104(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-66MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]