PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn172911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 204aa MW: 23563.1 Da PI: 4.4893 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.5e-14 | 14 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l +v+ + W++Ia +++ gRt++++k++w+++l Achn172911 14 KGPWSPEEDDKLRAYVQ----R-WSAIATRLP-GRTDNEIKNYWHTHL 55 79**************8....5.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.94E-14 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.119 | 9 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 10 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 13 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-12 | 14 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-11 | 16 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGRSPSFDKN GRKKGPWSPE EDDKLRAYVQ RWSAIATRLP GRTDNEIKNY WHTHLKKRLM 60 KENGEAIFEP KEQEIEASKS ETNLKQRSNQ ITEFPSENRA ILESAPLSPE LSSSEFSSSL 120 TYDYAVLRDK EWVIEDGNST NSSALLAEAI GNFWTEPFLE DKSFNKNEFS SRMEEGEFFY 180 PDSLYFDDGM DLLYQVLKDF PEM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028066339.1 | 1e-41 | transcription factor MYB14-like | ||||
Swissprot | Q9FJP2 | 3e-14 | MYB53_ARATH; Transcription factor MYB53 | ||||
TrEMBL | A0A2R6QCA9 | 1e-112 | A0A2R6QCA9_ACTCH; Myb-related protein like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 5e-18 | myb domain protein 16 |
Publications ? help Back to Top | |||
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