PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn172831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 291aa    MW: 33040 Da    PI: 7.8392
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn172831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-092973345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     rWTt E + + da + + ++   +W ++a++++ g+t  +++  + 
       Achn172831 29 RWTTVENKMFEDALAVYDKDtpdRWQKVAAMIP-GKTVGDVRRQYK 73
                     9********************************.********9987 PP
2Myb_DNA-binding45.91.3e-14136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
       Achn172831 136 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 180
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.3992580IPR017884SANT domain
SMARTSM007174.3E-92678IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-112883IPR009057Homeodomain-like
PfamPF002491.6E-62974IPR001005SANT/Myb domain
CDDcd001675.72E-72975No hitNo description
PROSITE profilePS5129420.728129185IPR017930Myb domain
SuperFamilySSF466896.43E-17130184IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17132184IPR006447Myb domain, plants
SMARTSM007173.2E-13133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-12133180IPR009057Homeodomain-like
PfamPF002495.0E-13136180IPR001005SANT/Myb domain
CDDcd001672.83E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEIMLPAYSD WLIEECSSDC PLEESRSTRW TTVENKMFED ALAVYDKDTP DRWQKVAAMI  60
PGKTVGDVRR QYKELEEDVS SIEAGLVPIP GYNSNPLTLE WGNDHGFDRF KPSYGPGGKR  120
PSSGRALEQE RKKGVPWTEE EHKLFLMGLK KYGKGDWRNI SRNFVITRTP TQVASHAQKY  180
FIRQLSGGKD KRRSSIHDIT TVNLNDNHQT LSPDSKRPPS PDQSFVIPHQ RNPVSIPRTQ  240
FQWNLQSGGA EMAVHHQAHG NTFMSPNEIH SYGPPNMGFQ VQSMHHYPHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1730941175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068071.11e-137transcription factor DIVARICATA
RefseqXP_012068079.11e-137transcription factor DIVARICATA
SwissprotQ8S9H71e-123DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2R6PPT10.0A0A2R6PPT1_ACTCH; Transcription factor DIVARICATA like
STRINGcassava4.1_012542m1e-134(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-101Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]