PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn171911
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 345aa    MW: 39388.2 Da    PI: 6.2603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn171911genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-184591148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd +l+++vkq+G + W+ Ia++m  gR +kqc++rw+++l
       Achn171911 45 KGQWTDEEDRKLLKLVKQYGVRKWAQIAEKMT-GRAGKQCRERWHNHL 91
                     799****************************9.*************97 PP
2Myb_DNA-binding54.33.2e-1797139145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W +eE++ l++a+k+ G++ W+ Ia++++ gRt++++k++w+
       Achn171911  97 KDTWNEEEEKMLIEAHKEVGNK-WAEIAKRIP-GRTENSIKNHWN 139
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.4274095IPR017930Myb domain
SuperFamilySSF466899.38E-3143138IPR009057Homeodomain-like
SMARTSM007173.9E-174493IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-274698IPR009057Homeodomain-like
PfamPF139212.3E-2148108No hitNo description
CDDcd001672.92E-154891No hitNo description
SMARTSM007171.1E-1696144IPR001005SANT/Myb domain
PROSITE profilePS5129420.07196146IPR017930Myb domain
CDDcd001671.10E-1299142No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2199144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAVVTETLKW MNEVNPNHEE DKPMERDSKG GGKRLKGGYS TALIKGQWTD EEDRKLLKLV  60
KQYGVRKWAQ IAEKMTGRAG KQCRERWHNH LRPDIKKDTW NEEEEKMLIE AHKEVGNKWA  120
EIAKRIPGRT ENSIKNHWNA TKRRQNSKRK IKKPEGHNGK SQSSTMLQDY IRSTTPTPNG  180
STVTDDLSNN FPLSLEDLSE PSIDDSPQFM NQTHEDEINF MMNLFGNKSD QSLSHDNNKA  240
IATMVEENSQ VDQLLISDAV DEDCIMFMNN TPMEVLPKTH LSPDLYLSYL LDGPASSTSK  300
DYYYGNTKVD SMAREDSSSG KKDMDLMEMI AASQLSLVGN WKYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-44431455107B-MYB
1mse_C4e-44431452104C-Myb DNA-Binding Domain
1msf_C4e-44431452104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051187.11e-107transcription factor MYB119-like
TrEMBLA0A2R6PQ020.0A0A2R6PQ02_ACTCH; Transcription factor like
STRINGGorai.001G115300.16e-97(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.19e-66myb domain protein 119