PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn171831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 535aa    MW: 58224.9 Da    PI: 5.0093
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn171831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.43.6e-1391655281374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++g+l+la+al++++  l+ +++ +m+++a+yf+eALa+r+++        + p+e+++++ s+ l++   f+e++P+lkf+h+taN
  Achn171831 165 LVHTLMACAEAVQQGNLKLADALVKHIGLLSLSQAGAMRKVATYFAEALARRIYK--------IYPQESHDTSYSDLLQM--HFYEACPYLKFAHFTAN 253
                 689****************************************************........56778776666666555..5**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+dl++  L+++p
  Achn171831 254 QAILEAFAGATRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVANSLADLDVAILDIRP 352
                 *************************************************************************************************** PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgrei 294
                    Ea+aVn+v+ lhrll+++ ++++    vL  +k ++Pk+v+vveqea+hn++ F++rf eal+yys++fdsl +++l ++s+++ ++++++lgr+i
  Achn171831 353 saAEAVAVNSVFDLHRLLARPSAIDK----VLASIKAMRPKIVTVVEQEANHNGSGFVDRFNEALHYYSTMFDSLeSSGLTQASNQDLVMSEVYLGRQI 447
                 99****************66666666....*********************************************888999****************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +nvvaceg++r+erhetl++ r r+++aGF+p++l+++a  qa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Achn171831 448 CNVVACEGTDRVERHETLSQLRTRMDSAGFEPAHLGSNAFRQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWQ 528
                 ********************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.5E-3437100IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.7E-3237107No hitNo description
PROSITE profilePS5098566.891139507IPR005202Transcription factor GRAS
PfamPF035141.2E-136165528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MKRDRDRDKA ESSSMAATAA EKGKMWTAEQ ADVGGMDELL AVLGYKVKAS DMLEVAQKLE  60
QLEMVMEEDG ISHLSSDTVH YNPSDLSGWV QSMLSELNDN SEYELSAIPG EAICKQNESS  120
AENEKKRRKT DGNRSGEAVS AEVCGGGTAA RPVVLVDSQE TGIRLVHTLM ACAEAVQQGN  180
LKLADALVKH IGLLSLSQAG AMRKVATYFA EALARRIYKI YPQESHDTSY SDLLQMHFYE  240
ACPYLKFAHF TANQAILEAF AGATRVHVID FSLKQGMQWP ALMQALALRP GGPPAFRLTG  300
IGPPQPDNTD ALQQVGWKLA QLADTIGVEF EFRGFVANSL ADLDVAILDI RPSAAEAVAV  360
NSVFDLHRLL ARPSAIDKVL ASIKAMRPKI VTVVEQEANH NGSGFVDRFN EALHYYSTMF  420
DSLESSGLTQ ASNQDLVMSE VYLGRQICNV VACEGTDRVE RHETLSQLRT RMDSAGFEPA  480
HLGSNAFRQA SMLLALFAGG DGYRVEENDG CLMLGWHTRP LIATSAWQLA ATAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6716052714378Protein SCARECROW
5b3h_A2e-6716052713377Protein SCARECROW
5b3h_D2e-6716052713377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124128KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5886540.0KF588654.1 Actinidia deliciosa GA repressor DELLA (RGL2a) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074537.10.0DELLA protein GAI-like
RefseqXP_027078270.10.0DELLA protein GAI-like
RefseqXP_027178624.10.0DELLA protein GAI-like
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
TrEMBLA0A2R6R6530.0A0A2R6R653_ACTCH; DELLA protein like
STRINGPOPTR_0005s14540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]