PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn171711
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27106.8 Da    PI: 8.0912
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn171711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.2e-284594251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+ yss
  Achn171711 45 KINNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFHYSS 94
                699*********************************************96 PP
2K-box44.95e-161261991891
       K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                 + ++++L ke+ +  +++R++ Ge+L+ L+++eLqqLe+ Le +l ++ +kK e ++++i +lq+k  e+ ++ 
  Achn171711 126 NSNYTRLSKEVVEKSHQLRKMRGEELQGLNIEELQQLERSLEAGLGRVIEKKGEKIMNEITHLQQKVMEACKAR 199
                 46789999999999999*************************************************99987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.5343696IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-383695IPR002100Transcription factor, MADS-box
CDDcd002656.07E-3837112No hitNo description
PROSITE patternPS0035003892IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-263858IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-3038114IPR002100Transcription factor, MADS-box
PfamPF003196.8E-264592IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-265873IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-267394IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.044122216IPR002487Transcription factor, K-box
PfamPF014861.0E-12126199IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MIGVKVGQTN WKMGEAGVDE GEGSGGLAMI GVKIEMAREK IKIRKINNAT ARQVTFSKRR  60
RGLFKKAEEL SVLCDADVAL IIFSSTGKLF HYSSSDMKGI LERHNVHSKN LEKLEQPSTE  120
LQLVENSNYT RLSKEVVEKS HQLRKMRGEE LQGLNIEELQ QLERSLEAGL GRVIEKKGEK  180
IMNEITHLQQ KVMEACKARK HSATDSDNVI NEQGQSSESV TNICNSTGPM QDYESSDTSL  240
KLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-2136104169MEF2C
5f28_B4e-2136104169MEF2C
5f28_C4e-2136104169MEF2C
5f28_D4e-2136104169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8382160.0JF838216.1 Actinidia chinensis SVP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631111.11e-116MADS-box protein SVP
SwissprotQ9FUY66e-99JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2R6R6411e-145A0A2R6R641_ACTCH; MADS-box protein like
STRINGcassava4.1_015543m1e-116(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]