PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn171491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 385aa    MW: 42706.4 Da    PI: 6.0262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn171491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07165186223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C +Cgk F+r  nL+ H+r H
  Achn171491 165 FCDICGKGFKRDANLRMHMRAH 186
                 6*******************99 PP
2zf-C2H211.30.0011279295521
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFsrksnLkrHir 21 
                  Cg++Fsrk+ L  H+ 
  Achn171491 279 SCGTTFSRKDKLFGHMA 295
                 5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.87E-6161187No hitNo description
Gene3DG3DSA:3.30.160.607.0E-6164186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.905164191IPR007087Zinc finger, C2H2
SMARTSM003550.0017164186IPR015880Zinc finger, C2H2-like
PfamPF128740.0051165184No hitNo description
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SMARTSM0035548210243IPR015880Zinc finger, C2H2-like
SMARTSM0035513248270IPR015880Zinc finger, C2H2-like
SMARTSM00355200276300IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSNPGDFRQI PATSDSSPRP PEASAEALRD PPTAGDPRVP LLNLSTVRSR MDSLHRFLSD  60
SVNTDTLIGK HQMDMVSNEI SAAIHQIFVN GAALLACTQA PPNPISVATD LKFPDNLGAS  120
LGMSKEKEVV ELKFEDEEMK DEIPSDDWEI IELDSVELLA EHIHFCDICG KGFKRDANLR  180
MHMRAHGNQF KTPEALAKPE RSLPERKTRF SCPFVGCNRN KSHKKFRPLK SAICVKNHFK  240
RSHCPKMYSC NRCNKKSFSV VADLKSHLKH CGESKWKCSC GTTFSRKDKL FGHMALFEGH  300
MPAVTVGEEE EKAKAVNAPV IVEDDDEDEY QMKEAETGMN SSDNGFLEGL FDGFGAIEGY  360
CLQDVLDLGS PNGLGATMNE FYNF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120431.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N59e-82STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A2R6R6580.0A0A2R6R658_ACTCH; Protein SENSITIVE TO PROTON RHIZOTOXICITY like
STRINGcassava4.1_009526m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.24e-84C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]