PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn169891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 480aa    MW: 52345.6 Da    PI: 6.7045
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn169891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box186e-061251437
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                  C+ ++ek +  +C+ ++  lC  C  + H+       H
  Achn169891 12 VPCDFCNEKIAVVYCRADSAKLCLFCDHHVHSAnplsgkH 51
                67**************************999545555555 PP
2zf-B_box17.87e-065498341
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 ++C++++ ++++  C +++ llC+dC +  H        H++ p
  Achn169891 54 SQICENCGCEPVSTRCATDNLLLCHDCDSDAHATssvssaHDRHP 98
                579*****************************6677777776655 PP
3CCT66.86.1e-23431474144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R +a+lRYkeK+ktR+F+K+irYesRKa+A++R+RvKGrFvk++
  Achn169891 431 RGNAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVKGRFVKAT 474
                 7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.6E-11956IPR000315B-box-type zinc finger
PROSITE profilePS501199.001956IPR000315B-box-type zinc finger
CDDcd000213.88E-61244No hitNo description
PROSITE profilePS501199.5275299IPR000315B-box-type zinc finger
CDDcd000218.48E-55699No hitNo description
SMARTSM003363.15799IPR000315B-box-type zinc finger
PROSITE profilePS5101715.15431473IPR010402CCT domain
PfamPF062036.8E-17431473IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MMSPKSRSGE SVPCDFCNEK IAVVYCRADS AKLCLFCDHH VHSANPLSGK HIRSQICENC  60
GCEPVSTRCA TDNLLLCHDC DSDAHATSSV SSAHDRHPVG GFSGCPSALE LASAWGINLE  120
GKKPQSPMQS MVDWTFQDTS ESIDSWIYKS AEGVILQDLR VPGGDAMVYS NGTHGERVAI  180
SKSQNLSCGK QKPVLFRQLM ELFKRELVGV DDNGGGGDGG VGEDLVPGTP NQSAWQGNVE  240
SVNHSMQQQD ETPFNSLLVM QTHVDLNHND QIAEGNTTWK TKSSGRGAQI WDFHLGQLRA  300
QEESGPLEVG YGSSDAGFMI KSYSELLKEE SLATTKGFGE IYGINCSMTH EDTSAFMNNP  360
NDATACQGPA TSESINLPIT RPSSGSAFGK PKCYGASKDI QFTEHSVLLR GETTRTAAIM  420
KADMEMIAQN RGNAMLRYKE KKKTRRFDKH IRYESRKARA DTRKRVKGRF VKATEAPDV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063335.10.0zinc finger protein CONSTANS-LIKE 14-like isoform X1
TrEMBLA0A2R6QQ910.0A0A2R6QQ91_ACTCH; Zinc finger protein like
STRINGVIT_01s0146g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-104B-box type zinc finger protein with CCT domain