PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn169731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 1067aa    MW: 118923 Da    PI: 6.2361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn169731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19867916255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a+++++g
  Achn169731 867 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAALAYDEAALRFKG 916
                 7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549281.09E-25243400IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3307.5E-18243326IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd125241.37E-49244320No hitNo description
PROSITE profilePS5010214.027245318IPR000504RNA recognition motif domain
SMARTSM003601.8E-11246314IPR000504RNA recognition motif domain
PfamPF000761.5E-10247311IPR000504RNA recognition motif domain
PROSITE profilePS5010210.735330403IPR000504RNA recognition motif domain
SMARTSM003605.6E-5331399IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3306.1E-12336403IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000763.7E-7336397IPR000504RNA recognition motif domain
PfamPF040597.5E-6734759IPR007201RNA recognition motif 2
Gene3DG3DSA:3.30.730.102.5E-32866925IPR001471AP2/ERF domain
SMARTSM003807.5E-39867930IPR001471AP2/ERF domain
PROSITE profilePS5103224.75867924IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21867925IPR016177DNA-binding domain
CDDcd000182.08E-32867925No hitNo description
PfamPF008476.3E-13867916IPR001471AP2/ERF domain
PRINTSPR003671.2E-10868879IPR001471AP2/ERF domain
PRINTSPR003671.2E-10890906IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MSDHYGVKVD GVLGTANSVP SSPFEKRMPV ERKMVKPCEW PGTYLIRDQK FNLSLEKHTV  60
GAERAASNFF NRSVDHDLGV RSNLNTEPAY YFMEGDEIWV VGAQYENGLF SSSLSELFSR  120
KMRLTSNNAL YGHSVRDAAS HYDEEEPFES LEEMEAQTIG NLHPNDDELL SGVTDGLDYV  180
GQPNTGEEIE DLDLFNSVGG MDLGEDGFPP GKRDSEFTGG NINSQPQGSV SSVVGEHPYG  240
KHPSRTLFVR NINTNVEDSE LQALFEQYGD IRTLYTTCKH RGFVMISYYD IRAARNAMRA  300
LQKKPLRRRK LDIHFSIPKD NPSEKDIKQG TFAALNLDSS VSNEELHQIF GVYGEIKVIS  360
EAPQRSHDKF IEFYDVRAAE AALRELNRSN IVGKKIKIEP SCTGGARECL MPPFPPDSEQ  420
DESPDSEQDE SGPYSKVAHL VTQQQDLLGQ LTVEFQGSPN FHPHSFLEYH DGYTNGAPCN  480
SLDMAVNFSA SPSDRIENRQ FCRVSSNGQT LELNDAVFGF SGNATVPSPV HHYVWSSSLQ  540
PQPQGLMWPN SPTFVNGVCT PSLRLHAFPR TPPPMLNTFL PINSHHMGSA PSANPSLWDR  600
RHTRGEESPN ASGFHPGSLG NMRISGNSPH HLEFVSQNIF SHVGGNCMDL PIPSKNIVLP  660
SPHQRCLIFP DRGQMIPLMS PFDSPNERAR SRRNDGSANQ ADNKKQFELD IDRIMRGGDN  720
RTTLMIKNIP NKYNKCNVGY AFINMTDPSL IIPLYKGTAA LITHFQNSSL MNEDKRCRPI  780
LFNTDGPNAG DQIEKVDPRH GKRPLPLEAP QEEKKEEPTA TGSGVSAFTR IMGTNPNTTS  840
PPPPSLLHST ASAQRIMQDQ GNVRKRHYRG VRQRPWGKWA AEIRDPKKAA RVWLGTFETA  900
EDAALAYDEA ALRFKGTKAK LNFPERVQAK TDYAYFTTST THGEDRISNP YVPPPPPPAP  960
PLPDSMSSQE TYPDLFQYAQ LLSSSDADFP YFSSALYNQH PFVSQSSTTP LMYSSIASNP  1020
QQQLQQEQQQ QQQQHEFPSF QSHMESSSSS ADLLKHGKNF GSGNSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27866927163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303309KPLRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698650.0GQ869865.1 Actinidia deliciosa ethylene response factor 14 (ERF14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027098711.10.0protein MEI2-like 4 isoform X4
RefseqXP_027098712.10.0protein MEI2-like 4 isoform X4
RefseqXP_027098713.10.0protein MEI2-like 4 isoform X4
TrEMBLA0A2R6P2U80.0A0A2R6P2U8_ACTCH; Protein MEI2-like
STRINGXP_008369630.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-35related to AP2 6l