PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn169441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27385.7 Da PI: 7.1006 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.2e-16 | 63 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v ++G+ +W++Ia+++ gR++k+c++rw++ Achn169441 63 RGHWRPAEDSKLKELVGLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 108 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 115 | 158 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++ +eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ Achn169441 115 RKAFNEEEEERLMAAHQLYGNK-WAMIARLFP-GRTDNAVKNHWHV 158 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.612 | 58 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 62 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 63 | 108 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.57E-27 | 63 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 64 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.61E-12 | 66 | 107 | No hit | No description |
PROSITE profile | PS51294 | 25.129 | 110 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-14 | 114 | 162 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-14 | 115 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.54E-10 | 117 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 117 | 163 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGSLSLTQPS WDFAFISKGE NSNSNESIDL NASLNDDDEE MSANINNLKA TESSSGQSKL 60 CARGHWRPAE DSKLKELVGL YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD PRINRKAFNE 120 EEEERLMAAH QLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREQSSA FRRRKMAQAL 180 HHTTRSMEEL KTEPPPPPPP QPYCFNFANG FCAQPPLSVF LPGASQEPCD GGYLEAEQQA 240 MG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 62 | 163 | 6 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028062029.1 | 7e-92 | transcription factor MYB105-like | ||||
Swissprot | Q9SEZ4 | 3e-74 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A2R6PBU6 | 1e-150 | A0A2R6PBU6_ACTCH; Transcription factor like | ||||
STRING | Solyc05g007870.1.1 | 9e-90 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-76 | myb domain protein 105 |
Publications ? help Back to Top | |||
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