PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn167681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 298aa    MW: 32842.8 Da    PI: 9.8934
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn167681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-18106156155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGVr +k +g+Wv+eIr p++   r r++lg++ +ae+Aa+a +aa  +l+g
  Achn167681 106 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYKSAEKAARAFDAALFCLRG 156
                 89*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.15E-29106166No hitNo description
PfamPF008471.6E-10106156IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-20106165IPR016177DNA-binding domain
PROSITE profilePS5103221.878107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-29107165IPR001471AP2/ERF domain
SMARTSM003807.9E-34107170IPR001471AP2/ERF domain
PRINTSPR003677.8E-9108119IPR001471AP2/ERF domain
PRINTSPR003677.8E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MWAVGVVSGV SRTPPIYPRG TNLPRAPKPP RIPFPITIRH IFIQSRQFPS PSNSLSPQTQ  60
HNQTIQTPLS KFAIDKSFWF REFVNKQGMV KPETSKQAER STSDESKYKG VRKRKWGKWV  120
SEIRLPNSRE RIWLGSYKSA EKAARAFDAA LFCLRGPSAK FNFPENPPDI AGGRSLTPAE  180
IQVAAARFAN AEPQTIRSRR SSSSSSSSSS SEMQVESPSP SVSDGVAPMG TETPLDGSFL  240
NLFATMGSEN TGPGSFDIFP GFDDFSNEFF VPPLPNVDYG EENCDGNFSQ GSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-141031651073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121981.11e-106ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-57ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2R6QUL91e-146A0A2R6QUL9_ACTCH; Ethylene-responsive transcription factor
STRINGPOPTR_0006s14100.16e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]