PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn166681

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YB

Protein Properties

Length: 437aa MW: 48796.9 Da PI: 8.0994

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn166681	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	64.9	1.6e-20	2	79	14	91
NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++i+k++lP + ++++da++++ ec +efi +++se++d c +e++kti+++ +l al lGf +y+e + + +++r Achn166681 2 TKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNDVCSKEEKKTIAPEHVLKALQVLGFGEYIEDVYAAYEQHR 79 68******************************************************************9977666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-33	2	121	IPR009072	Histone-fold
Pfam	PF00808	7.4E-18	2	59	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.7E-30	2	122	IPR009072	Histone-fold
TIGRFAMs	TIGR01570	2.2E-63	271	436	IPR006460	Protein of unknown function DUF617, plant
Pfam	PF04759	1.8E-69	271	435	IPR006460	Protein of unknown function DUF617, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESND VCSKEEKKTI APEHVLKALQ 60 VLGFGEYIED VYAAYEQHRL ETMQDSLKGA KWSNVAEMTE EEALAEQQRM FAEARARMNG 120 GATTPKQTDP EATVAKESEL EPRWFSSWCL FRAPSELVPP RMLIRDPSQV KTVMAKSSED 180 VCSKRHFHWT NKVSNKDEEE ETPTLKPPSS NTSHGDEKKE KDKVPPPPGT AASKVAAQRR 240 KLQAIAVSKV RSVFAAFSKN RAHSPGLSPR VIGTLFGHRR GHVHFALQKE PNSPPAFLIE 300 LATPISGLVR EMASGLVRIA LECDKDKEEK KAVVAGRRRL LEEPQWRTYC NGKKCGFAAR 360 RECGPKEWKI LKAVEPISMG AGVLPGDGSE SDKDGEVMYM RAKFERVVGC RDSEAFYMMN 420 PDRNGAPELS IYLLRV*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESND VCSKEEKKTI APEHVLKALQ  60
VLGFGEYIED VYAAYEQHRL ETMQDSLKGA KWSNVAEMTE EEALAEQQRM FAEARARMNG  120
GATTPKQTDP EATVAKESEL EPRWFSSWCL FRAPSELVPP RMLIRDPSQV KTVMAKSSED  180
VCSKRHFHWT NKVSNKDEEE ETPTLKPPSS NTSHGDEKKE KDKVPPPPGT AASKVAAQRR  240
KLQAIAVSKV RSVFAAFSKN RAHSPGLSPR VIGTLFGHRR GHVHFALQKE PNSPPAFLIE  300
LATPISGLVR EMASGLVRIA LECDKDKEEK KAVVAGRRRL LEEPQWRTYC NGKKCGFAAR  360
RECGPKEWKI LKAVEPISMG AGVLPGDGSE SDKDGEVMYM RAKFERVVGC RDSEAFYMMN  420
PDRNGAPELS IYLLRV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-28	1	115	21	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015883054.1	1e-130	protein MIZU-KUSSEI 1
TrEMBL	A0A2R6PUZ8	0.0	A0A2R6PUZ8_ACTCH; Protein MIZU-KUSSEI like
STRING	VIT_17s0000g04340.t01	1e-124	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	7e-75	nuclear factor Y, subunit B13