PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn165331
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 581aa    MW: 64794.6 Da    PI: 5.642
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn165331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.96.4e-1302105791373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ecA+a+s+++  + ++l+ + +  +s +gdp+qRl ay++eAL ar   s+s++y++ +++e +    ++ l+++++++e++P+lkf++++aN
  Achn165331 210 LKQLLIECAKALSENKIDAFDNLIDKARSVVSVSGDPIQRLGAYLVEALLARKEASGSNIYRSQRCKEPE---GKDLLSYMQILYEICPYLKFGYMAAN 305
                 689*****************************************************************99...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p ++  + ++l ++++rL+++ +++++p+ef++ v     d+++++L+v
  Achn165331 306 GAIADACRNEDRIHIIDFQIAQGTQWITLLQALAARPSGAPHVRITGIDDPVNQyaRGDSLAAVEKRLKEISNKFNIPVEFHA-VPVFAPDVTIDMLDV 403
                 ***************************************************999999**************************.688899********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEal Vn+ lqlh+++desv+++++rd +L++vksl+Pkvv++veqe+++n+++F++rf+e+l++ysa+f+s++++lpr+ +eri+ E+++l+r+iv
  Achn165331 404 RPGEALTVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLNPKVVTLVEQESNTNTAPFVARFVETLNFYSAMFESIDVTLPRDRKERINAEQHCLARDIV 502
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 n++aceg+er+erhe ++kW++r+++aGF ++pls+++++ +k llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  Achn165331 503 NIIACEGKERVERHELFGKWKSRFTMAGFLQYPLSSYVNSVIKGLLRCYS-EYYTLVEKDGAMLLGWKDRNLISASAW 579
                 **********************************************9998.66************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.267184561IPR005202Transcription factor GRAS
PfamPF035142.2E-127210579IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDSRQFFGYG VTGADLSYSS YPTVPSVPAR LYESLKFGSR NSPNSPFSTH FDSENLATLS  60
DSPEQHSSTE NLSGASPSYN SSLESNNYCQ QLSPSLGCQK NSVRLHFGET SFSQDDNIKY  120
ALQELETTLM ALDDEDEVTT PSPSLGENKR PQTSGQRSMA WSQEPQGSHV TQSQPSHSSR  180
YGKSDDSFRS EKRHKSMEDD SLQGIPPGNL KQLLIECAKA LSENKIDAFD NLIDKARSVV  240
SVSGDPIQRL GAYLVEALLA RKEASGSNIY RSQRCKEPEG KDLLSYMQIL YEICPYLKFG  300
YMAANGAIAD ACRNEDRIHI IDFQIAQGTQ WITLLQALAA RPSGAPHVRI TGIDDPVNQY  360
ARGDSLAAVE KRLKEISNKF NIPVEFHAVP VFAPDVTIDM LDVRPGEALT VNFPLQLHHT  420
PDESVDVNNP RDGLLRMVKS LNPKVVTLVE QESNTNTAPF VARFVETLNF YSAMFESIDV  480
TLPRDRKERI NAEQHCLARD IVNIIACEGK ERVERHELFG KWKSRFTMAG FLQYPLSSYV  540
NSVIKGLLRC YSEYYTLVEK DGAMLLGWKD RNLISASAWH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-622125806375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126203.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2R6QWV60.0A0A2R6QWV6_ACTCH; Chitin-inducible gibberellin-responsive protein
STRINGGorai.002G080600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]