PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn165331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 581aa MW: 64794.6 Da PI: 5.642 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 424.9 | 6.4e-130 | 210 | 579 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL+ecA+a+s+++ + ++l+ + + +s +gdp+qRl ay++eAL ar s+s++y++ +++e + ++ l+++++++e++P+lkf++++aN Achn165331 210 LKQLLIECAKALSENKIDAFDNLIDKARSVVSVSGDPIQRLGAYLVEALLARKEASGSNIYRSQRCKEPE---GKDLLSYMQILYEICPYLKFGYMAAN 305 689*****************************************************************99...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aI +a +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p ++ + ++l ++++rL+++ +++++p+ef++ v d+++++L+v Achn165331 306 GAIADACRNEDRIHIIDFQIAQGTQWITLLQALAARPSGAPHVRITGIDDPVNQyaRGDSLAAVEKRLKEISNKFNIPVEFHA-VPVFAPDVTIDMLDV 403 ***************************************************999999**************************.688899********* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +pgEal Vn+ lqlh+++desv+++++rd +L++vksl+Pkvv++veqe+++n+++F++rf+e+l++ysa+f+s++++lpr+ +eri+ E+++l+r+iv Achn165331 404 RPGEALTVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLNPKVVTLVEQESNTNTAPFVARFVETLNFYSAMFESIDVTLPRDRKERINAEQHCLARDIV 502 *************************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 n++aceg+er+erhe ++kW++r+++aGF ++pls+++++ +k llr ++ + y++ e++g+++lgWkdr+L+s+SaW Achn165331 503 NIIACEGKERVERHELFGKWKSRFTMAGFLQYPLSSYVNSVIKGLLRCYS-EYYTLVEKDGAMLLGWKDRNLISASAW 579 **********************************************9998.66************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.267 | 184 | 561 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-127 | 210 | 579 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MDSRQFFGYG VTGADLSYSS YPTVPSVPAR LYESLKFGSR NSPNSPFSTH FDSENLATLS 60 DSPEQHSSTE NLSGASPSYN SSLESNNYCQ QLSPSLGCQK NSVRLHFGET SFSQDDNIKY 120 ALQELETTLM ALDDEDEVTT PSPSLGENKR PQTSGQRSMA WSQEPQGSHV TQSQPSHSSR 180 YGKSDDSFRS EKRHKSMEDD SLQGIPPGNL KQLLIECAKA LSENKIDAFD NLIDKARSVV 240 SVSGDPIQRL GAYLVEALLA RKEASGSNIY RSQRCKEPEG KDLLSYMQIL YEICPYLKFG 300 YMAANGAIAD ACRNEDRIHI IDFQIAQGTQ WITLLQALAA RPSGAPHVRI TGIDDPVNQY 360 ARGDSLAAVE KRLKEISNKF NIPVEFHAVP VFAPDVTIDM LDVRPGEALT VNFPLQLHHT 420 PDESVDVNNP RDGLLRMVKS LNPKVVTLVE QESNTNTAPF VARFVETLNF YSAMFESIDV 480 TLPRDRKERI NAEQHCLARD IVNIIACEGK ERVERHELFG KWKSRFTMAG FLQYPLSSYV 540 NSVIKGLLRC YSEYYTLVEK DGAMLLGWKD RNLISASAWH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-62 | 212 | 580 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028126203.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A2R6QWV6 | 0.0 | A0A2R6QWV6_ACTCH; Chitin-inducible gibberellin-responsive protein | ||||
STRING | Gorai.002G080600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-175 | GRAS family protein |
Publications ? help Back to Top | |||
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