PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn164781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 357aa    MW: 39320.4 Da    PI: 9.2507
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn164781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.72.7e-1719112276
    trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                 Wt +e+++Liea++ ++er  +++                    ++ +W++v  ++++ g+ rs++qC++kw+nl +++kk+++ +++r+s ss
  Achn164781  19 WTVEETMVLIEAKKMDGERRMKRSiggessegiikiicssstkPAELRWKWVEGYCWRNGCLRSQNQCNDKWDNLMRDFKKVRDYQRRRSSLSS 112
                 *************988777776655566677888888888877999******************************************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.2011194IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-51395IPR009057Homeodomain-like
PfamPF138371.4E-1218109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MANQGGGNSV LRNYRKGNWT VEETMVLIEA KKMDGERRMK RSIGGESSEG IIKIICSSST  60
KPAELRWKWV EGYCWRNGCL RSQNQCNDKW DNLMRDFKKV RDYQRRRSSL SSSGAGDDHG  120
RGSYWKMEKH ERKERNLPSN MLPDIYQALM EVVERKESVS PRTLALPGPA GGGDGSGGYV  180
VVERSTPLAV LPLPSLPLPP SPPLLPPLLP LPAAAAPLQP LRHSNQPLPT VDSGDTSEHA  240
DSPAAKKRRR GSGEDTSCGI HPSGTTPPPP PSHDQVIDSA ISRSASIIAE AIQACEERKD  300
RRHRDLLSLQ ERRLHIEESE ITRQGFNCLV DAINKLANSI LALANSNHHQ TTTTPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244250AKKRRRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062501.11e-114WASH complex subunit 1 isoform X1
TrEMBLA0A2R6Q5I60.0A0A2R6Q5I6_ACTCH; Trihelix transcription factor
STRINGGorai.010G171500.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.18e-53Trihelix family protein