PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn164421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 379aa    MW: 42517.9 Da    PI: 4.7602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn164421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20109158255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++aa++k++g
  Achn164421 109 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAAARKIRG 158
                 69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-23109167IPR016177DNA-binding domain
SMARTSM003808.9E-40109172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-33109167IPR001471AP2/ERF domain
CDDcd000184.43E-21109168No hitNo description
PROSITE profilePS5103224.79109166IPR001471AP2/ERF domain
PRINTSPR003671.1E-11110121IPR001471AP2/ERF domain
PfamPF008472.1E-13110158IPR001471AP2/ERF domain
PRINTSPR003671.1E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MCGGAIISDI IAPASSRRLT ADFLWPSDVK KNRSNYYSKP LRSEIVGLGD DFEADFQDFK  60
DYFDDEDGDG RDFAFSASKS GLSHDSRSKK SVESHGQAEK SAKRKKKNQY RGIRQRPWGK  120
WAAEIRDPRK GVRVWLGTFN TAEEAARAYD AAARKIRGKK AKINFPDDAP SSTPKRTVKA  180
NTQKLPSKES PSTVQPRLNQ NFNFINPDPD NYSMSFVEEK PPTKQYGFTD AYPMPEEVGL  240
KSFTPFDGAT LYFNSDQESN SFDCSDFEWG EYNGKMPEIS SLLSAATKDD EAQFVQDANP  300
TKKLKPNPVD MVPDEENSGK KLSEELSEFE SQMKFFQIPY LEGNWDASVD TFLGGDATQD  360
GGNSMDFWIF DDMVTGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21109166260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-211081681374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101107AKRKKKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028064263.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2R6R0L20.0A0A2R6R0L2_ACTCH; Ethylene-responsive transcription factor RAP2-12 like (Fragment)
STRINGXP_008228117.11e-161(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-52related to AP2 12