PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn163941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 517aa MW: 56509.4 Da PI: 8.3094 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.1e-08 | 59 | 98 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l++av+++ + ++ R++ qc +rwqk+l Achn163941 59 KGGWTPEEDDTLKRAVTLFKA-------EFFP-DRSEVQCLHRWQKVL 98 688****************94.......5***.************986 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 104 | 150 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+e+d++++++v ++G+ W++Ia+ ++ gR +kqc++rw+++l Achn163941 104 KGPWTQEDDDKIIELVSKYGPAKWSLIAKSLP-GRIGKQCRERWHNHL 150 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.4 | 2.2e-15 | 156 | 199 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ +a++ +G++ W+ Ia+ + gRt++ +k++w++ Achn163941 156 KDAWTLEEELAVMNAHHIYGNK-WAEIAKVLC-GRTDNAIKNHWNS 199 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.877 | 54 | 98 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 6.32E-9 | 55 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-6 | 58 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-6 | 59 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 61 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.82E-7 | 62 | 98 | No hit | No description |
PROSITE profile | PS51294 | 31.756 | 99 | 154 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.27E-30 | 101 | 197 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-17 | 103 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-15 | 106 | 150 | No hit | No description |
Pfam | PF13921 | 8.2E-18 | 107 | 164 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-27 | 107 | 153 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 154 | 205 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.005 | 155 | 205 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 155 | 203 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.00E-11 | 158 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MAEVKREEPC LENKQSAAAS SCSVSEGSGS VTLKSPGICS PTATSPSNRR STGPIRRAKG 60 GWTPEEDDTL KRAVTLFKAE FFPDRSEVQC LHRWQKVLNP ELVKGPWTQE DDDKIIELVS 120 KYGPAKWSLI AKSLPGRIGK QCRERWHNHL NPDIKKDAWT LEEELAVMNA HHIYGNKWAE 180 IAKVLCGRTD NAIKNHWNSS LKKKLDFYLA TGKLPPVANN CVQSGVTDSS RSASTGKLLV 240 CSNKGSEPAA QTSSVATELC TIEDDPKEQD SSIPVPDMAV SSSAPANESV DSEAVKCNSQ 300 SSDINLRNSY SNIELKLESC RANGDIDQEK ARGTSLKFGS STYGSLYYEP PQLESCVQSD 360 SYLLNVSFML QKSNSSPHGS PVSFFTPPCV KGDGFHRLSP ESILKHAARS FPNTPSILLR 420 KRKIEAQTPL PSKKIGKDKG EVFQDRSYTS DEQVHTTNSL ENSGLRDESS YGSPGILGSG 480 TTGLCNGKAF NASPPYRLRS KRTAISKSVE KQLEYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-64 | 58 | 205 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-64 | 58 | 205 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077818.1 | 0.0 | transcription factor MYB3R-5 isoform X1 | ||||
Swissprot | Q6R032 | 1e-147 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A2R6RY74 | 0.0 | A0A2R6RY74_ACTCH; Myb-related protein like | ||||
STRING | VIT_08s0007g00360.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5461 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-142 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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