PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn163941
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 517aa    MW: 56509.4 Da    PI: 8.3094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn163941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.1e-085998148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd+ l++av+++         + ++  R++ qc +rwqk+l
       Achn163941 59 KGGWTPEEDDTLKRAVTLFKA-------EFFP-DRSEVQCLHRWQKVL 98
                     688****************94.......5***.************986 PP

2Myb_DNA-binding58.21.9e-18104150148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+e+d++++++v ++G+  W++Ia+ ++ gR +kqc++rw+++l
       Achn163941 104 KGPWTQEDDDKIIELVSKYGPAKWSLIAKSLP-GRIGKQCRERWHNHL 150
                      79******************************.*************97 PP

3Myb_DNA-binding48.42.2e-15156199146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++   +a++ +G++ W+ Ia+ +  gRt++ +k++w++
       Achn163941 156 KDAWTLEEELAVMNAHHIYGNK-WAEIAKVLC-GRTDNAIKNHWNS 199
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.8775498IPR017877Myb-like domain
SuperFamilySSF466896.32E-955101IPR009057Homeodomain-like
SMARTSM007171.9E-658100IPR001005SANT/Myb domain
PfamPF002493.5E-65998IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1261106IPR009057Homeodomain-like
CDDcd001676.82E-76298No hitNo description
PROSITE profilePS5129431.75699154IPR017930Myb domain
SuperFamilySSF466893.27E-30101197IPR009057Homeodomain-like
SMARTSM007172.4E-17103152IPR001005SANT/Myb domain
CDDcd001671.44E-15106150No hitNo description
PfamPF139218.2E-18107164No hitNo description
Gene3DG3DSA:1.10.10.603.3E-27107153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-21154205IPR009057Homeodomain-like
PROSITE profilePS5129420.005155205IPR017930Myb domain
SMARTSM007171.6E-14155203IPR001005SANT/Myb domain
CDDcd001674.00E-11158201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAEVKREEPC LENKQSAAAS SCSVSEGSGS VTLKSPGICS PTATSPSNRR STGPIRRAKG  60
GWTPEEDDTL KRAVTLFKAE FFPDRSEVQC LHRWQKVLNP ELVKGPWTQE DDDKIIELVS  120
KYGPAKWSLI AKSLPGRIGK QCRERWHNHL NPDIKKDAWT LEEELAVMNA HHIYGNKWAE  180
IAKVLCGRTD NAIKNHWNSS LKKKLDFYLA TGKLPPVANN CVQSGVTDSS RSASTGKLLV  240
CSNKGSEPAA QTSSVATELC TIEDDPKEQD SSIPVPDMAV SSSAPANESV DSEAVKCNSQ  300
SSDINLRNSY SNIELKLESC RANGDIDQEK ARGTSLKFGS STYGSLYYEP PQLESCVQSD  360
SYLLNVSFML QKSNSSPHGS PVSFFTPPCV KGDGFHRLSP ESILKHAARS FPNTPSILLR  420
KRKIEAQTPL PSKKIGKDKG EVFQDRSYTS DEQVHTTNSL ENSGLRDESS YGSPGILGSG  480
TTGLCNGKAF NASPPYRLRS KRTAISKSVE KQLEYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-64582055159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-64582055159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077818.10.0transcription factor MYB3R-5 isoform X1
SwissprotQ6R0321e-147MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2R6RY740.0A0A2R6RY74_ACTCH; Myb-related protein like
STRINGVIT_08s0007g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-142myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]