PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn163291

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 892aa MW: 102348 Da PI: 8.4558

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn163291	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.1	4.6e-16	172	257	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y ++Ak GF v++++ +k++++++ + t++C + gk++++ k + +++ +tgC+a++++++++dgkw++++++l+ nHe++p Achn163291 172 NYYASFAKVQGFVVVTRS-YKTHKDRRRRHITYCCHRGGKARTKALK----VKAHPTAKTGCQASMNISLHTDGKWVLNTIKLKNNHEICP 257 69********988775.666688889*********998877....9999*******************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-13	172	257	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-32	377	470	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.435	662	700	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-5	672	693	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-4	675	702	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MPGNPIPKPL NPDFNSKKPQ INLKTSNAIH NHHQTPFPLL PTNVAPFPAT SDEALKTPLT 60 NDPGLQMIEP LAQSQPWTTS ETTSSLSETL ISLPLISVQN SHCGGASSTH PNFTPMRNRE 120 THESSPEFEG DENRSILGMD CDAYPLEEDP NLENVGEPKV GMSFDSEHEA RNYYASFAKV 180 QGFVVVTRSY KTHKDRRRRH ITYCCHRGGK ARTKALKVKA HPTAKTGCQA SMNISLHTDG 240 KWVLNTIKLK NNHEICPIKS RYLKFNRIIP QHTKRLLEMN CSAGIRLNKT ISSCVLEAKG 300 HEKLTWSEKD ARNYMDQVQR SQLKEGDAEA MHQYFNRMRE DNNNFLYAMD LDKEHRLCNV 360 FWADARSREA FKEFGDVVTF DTTYLVNKYN MPFAPFVGVN HHRQSILLGC PLVLREDTSS 420 FVWLFETWVS CMFGRSPNAI ITDQCKAMQN AISIVLPNAQ HHWCLWYILK KIPDKLKGYK 480 DYKSIRYELH NAIYDSLTIG EFEENWANVI KKFQLGDNDW LSGLYEERHR WVPAFVKDNF 540 WVGMSSTQRS ESMNAFFDGY VHSNTTLKEF MGQYENALRK KVQKEEEEDT RCFNVQLKTM 600 SPYGFEKQFQ QAYTIEKFQQ FQSEITGKIP CSIFFVKIVD RISEYEIQED IQVGESGYLK 660 TITFHVHFDE VSKESNCTCR LFEYKGIVCK HIIVLWIVEK LDSIPDKYIL RRWRKDVMRS 720 HTKVKAAFDA AADKAMYSEA KTERVVAKLR EVEVENDVCD DEYLVTPISI DVQDSIVSPI 780 DKQKPMGDPI KRRRIGRPPI NRKKPMIEKI ITKVQQSREK TQGSQGKAND GLDFVERERG 840 LTSIAVAGFG GYDGDCWLRE LVRERHGGCR WGGVTGGRRG GVSMVDGRRK A*

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MPGNPIPKPL NPDFNSKKPQ INLKTSNAIH NHHQTPFPLL PTNVAPFPAT SDEALKTPLT  60
NDPGLQMIEP LAQSQPWTTS ETTSSLSETL ISLPLISVQN SHCGGASSTH PNFTPMRNRE  120
THESSPEFEG DENRSILGMD CDAYPLEEDP NLENVGEPKV GMSFDSEHEA RNYYASFAKV  180
QGFVVVTRSY KTHKDRRRRH ITYCCHRGGK ARTKALKVKA HPTAKTGCQA SMNISLHTDG  240
KWVLNTIKLK NNHEICPIKS RYLKFNRIIP QHTKRLLEMN CSAGIRLNKT ISSCVLEAKG  300
HEKLTWSEKD ARNYMDQVQR SQLKEGDAEA MHQYFNRMRE DNNNFLYAMD LDKEHRLCNV  360
FWADARSREA FKEFGDVVTF DTTYLVNKYN MPFAPFVGVN HHRQSILLGC PLVLREDTSS  420
FVWLFETWVS CMFGRSPNAI ITDQCKAMQN AISIVLPNAQ HHWCLWYILK KIPDKLKGYK  480
DYKSIRYELH NAIYDSLTIG EFEENWANVI KKFQLGDNDW LSGLYEERHR WVPAFVKDNF  540
WVGMSSTQRS ESMNAFFDGY VHSNTTLKEF MGQYENALRK KVQKEEEEDT RCFNVQLKTM  600
SPYGFEKQFQ QAYTIEKFQQ FQSEITGKIP CSIFFVKIVD RISEYEIQED IQVGESGYLK  660
TITFHVHFDE VSKESNCTCR LFEYKGIVCK HIIVLWIVEK LDSIPDKYIL RRWRKDVMRS  720
HTKVKAAFDA AADKAMYSEA KTERVVAKLR EVEVENDVCD DEYLVTPISI DVQDSIVSPI  780
DKQKPMGDPI KRRRIGRPPI NRKKPMIEKI ITKVQQSREK TQGSQGKAND GLDFVERERG  840
LTSIAVAGFG GYDGDCWLRE LVRERHGGCR WGGVTGGRRG GVSMVDGRRK A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	790	794	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028065479.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-117	FAR1-related sequence 5