PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn161461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 333aa    MW: 37300.4 Da    PI: 8.5682
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn161461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.4e-26958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++ +qvtfskRrng++KKA+ELSvLCd++ a+i+fs++g+l  +s
  Achn161461  9 KRIENNTSQQVTFSKRRNGLIKKAYELSVLCDIDLALIMFSPSGRLTQFS 58
                79*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.273161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-25267IPR002100Transcription factor, MADS-box
CDDcd002657.91E-30258No hitNo description
PRINTSPR004043.7E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRVKPEIKR IENNTSQQVT FSKRRNGLIK KAYELSVLCD IDLALIMFSP SGRLTQFSGK  60
RSVFEPDLSN MTSLEELESC EKQLEDTLTT VTERKVRKSF TSIIQLALLL RDISSAAYNP  120
ILQGSSSNIE RVMGECHIDR PDNENLPAWH HTYASTDPSP FHIPPPHLFI SIQVSLLTKT  180
TSSSLIGKFS VAFSYTYQGM EEPGMAGATP HDQAEVTSKS SVEQPDTEAA NYEGEPVTKP  240
ISLTDAVASR KLIYHLLQER KQEILRNNYR SARSYTKKRE KRARKMNSAK DNLNIGYCRT  300
PKAEAEKPSA PGISKREELQ MGLEMLSETL LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-15158158Myocyte-specific enhancer factor 2B
1tqe_Q2e-15158158Myocyte-specific enhancer factor 2B
1tqe_R2e-15158158Myocyte-specific enhancer factor 2B
1tqe_S2e-15158158Myocyte-specific enhancer factor 2B
6c9l_A2e-15158158Myocyte-specific enhancer factor 2B
6c9l_B2e-15158158Myocyte-specific enhancer factor 2B
6c9l_C2e-15158158Myocyte-specific enhancer factor 2B
6c9l_D2e-15158158Myocyte-specific enhancer factor 2B
6c9l_E2e-15158158Myocyte-specific enhancer factor 2B
6c9l_F2e-15158158Myocyte-specific enhancer factor 2B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-28AGAMOUS-like 104