PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn160491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 401aa    MW: 44548.1 Da    PI: 4.9346
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn160491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.74.1e-083503822254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +yp++e++++L +++gL+ +q+ +WF N+R +
  Achn160491 350 WPYPTEEDKAKLVQETGLELKQINNWFINQRKR 382
                 58*****************************87 PP
2ELK26.31.7e-09303324122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++L+++++E++
  Achn160491 303 ELKHELKQGYKEKLVNIREEIL 324
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-17164208IPR005540KNOX1
PfamPF037902.1E-15167207IPR005540KNOX1
PROSITE profilePS5121310.022303323IPR005539ELK domain
SMARTSM011880.0014303324IPR005539ELK domain
PfamPF037894.1E-6303324IPR005539ELK domain
PROSITE profilePS5007111.774323386IPR001356Homeobox domain
SMARTSM003892.0E-11325390IPR001356Homeobox domain
SuperFamilySSF466898.55E-16325389IPR009057Homeodomain-like
CDDcd000864.57E-11326385No hitNo description
Gene3DG3DSA:1.10.10.608.8E-25330388IPR009057Homeodomain-like
PfamPF059203.9E-17343382IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAFRNHISQE MALQQFSDQD LGEDASVLRT ILPEQDGERL ISESAGDPPE QRHQPPQVGV  60
GPTWLSRAIL RQQNQYGDIN LHAKSDSNQW LSRSILQRSV SDLQVSNDSM IAPSISHEST  120
DLENNNNGSR NFGRNQTENN DGGGGGFDGG DGGGGDGIMN WQNARNKCEI LAHPLYEQLL  180
SAHVACLRIA TPVDQLLRID AQLAQSQHVV AKYSSLGNGD SGDDKELDQF MTKANSAFNM  240
LPEQGVSSGE GMGATMSDED EDDQVDSDTN LYDGSLDGPD TMGFGPLIPT ESERSLMERV  300
RQELKHELKQ GYKEKLVNIR EEILRKRRAG KLPGDTTSVL KAWWQSNAKW PYPTEEDKAK  360
LVQETGLELK QINNWFINQR KRNWHSNTSS STVSKSKRKR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379399RKRNWHSNTSSSTVSKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5868143e-31KM586814.1 Primula vulgaris knotted-like 3 protein (KNL3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115052.10.0homeobox protein knotted-1-like 3
SwissprotP480001e-139KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2R6Q2M50.0A0A2R6Q2M5_ACTCH; Homeobox protein knotted-1-like
STRINGVIT_04s0008g06130.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-120KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]