PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn159401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 123aa MW: 13517.9 Da PI: 5.2633 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.2 | 2.3e-14 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +k+g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Achn159401 2 RKWGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFCLRG 44 46**********9...336*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-25 | 1 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.39E-24 | 1 | 53 | No hit | No description |
PROSITE profile | PS51032 | 19.164 | 1 | 52 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-28 | 1 | 58 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-8 | 2 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 2 | 53 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 123 aa Download sequence Send to blast |
MRKWGKWVAE IREPNKRSRI WLGSYSSPVA AARAYDTAVF CLRGPSARLN FPEYITEEDD 60 LRDGGGADMS SASIRKKATE VGARVDALET AHHHGPAESN SARVSVKPDL NEYPDPENSD 120 EE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019082291.1 | 8e-60 | PREDICTED: ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q8LC30 | 1e-43 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A2R6RN78 | 1e-84 | A0A2R6RN78_ACTCH; Ethylene-responsive transcription factor RAP2-10 like | ||||
STRING | VIT_18s0001g10150.t01 | 5e-60 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G46768.1 | 5e-46 | related to AP2 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|