PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn159361
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 334aa    MW: 36662.6 Da    PI: 10.2898
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn159361genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.8e-31261318359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Achn159361 261 DDFTWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLIVTYEGEHNHS 318
                 99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.9E-15215257IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.6E-32247318IPR003657WRKY domain
PROSITE profilePS5081130.217254320IPR003657WRKY domain
SuperFamilySSF1182901.7E-26257318IPR003657WRKY domain
SMARTSM007741.9E-37259319IPR003657WRKY domain
PfamPF031061.1E-26261317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAVDLMSYRD DSFGAKMEES AAKEAATAGM QSVETLIRML SHQNQPKASS NGQVDYRAVA  60
DVAVNKFKKF ISVLDRTRTG HARFRRGPVT QRPPQDQKIS KSERVVQATN PNQTEDKKDS  120
IPRVYCPTPI QRLPPLPHNH YHQLVKNGSI DRKESTTTIN FAASPPISSA NSFKSSLTGD  180
TDSLQPSMSS AFQLTNLSQV SSSCRLPLSS SSSLKRKCSS MDDLAAKCGG RCHCSKKRKS  240
RVKRVVRVPA VSAKLADIPP DDFTWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA  300
LDDPAMLIVT YEGEHNHSHA VGEATAPLIL ESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21247317271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604893.11e-162PREDICTED: probable WRKY transcription factor 7
RefseqXP_016499499.11e-162PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-108WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2R6Q0580.0A0A2R6Q058_ACTCH; WRKY transcription factor
STRINGXP_009604893.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-82WRKY DNA-binding protein 7