PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn159211

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 162aa MW: 17391.7 Da PI: 6.3424

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn159211	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.1	3.7e-11	29	76	50	97
DUF260 50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++ ++++++sl++eA+ r+ +Pv+Gavg++++++++++q++++++l+ Achn159211 29 IHKPKQALFQSLLFEACGRTVNPVNGAVGLLSTGNWHVCQTAVNTVLA 76 4556899**********************************9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.4E-7	29	74	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MTRDVISDSS LTFNPMVEKQ AAPFIDNHIH KPKQALFQSL LFEACGRTVN PVNGAVGLLS 60 TGNWHVCQTA VNTVLAGGTL RPLTAPILTH EASDAFDSSP KIWNFQKCFS EGAQRQPSDL 120 KTAATMTSDS GESEMVAGFH GGNYGAEKLR AEEPKLLNLF V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028056214.1	2e-35	LOB domain-containing protein 39-like
Swissprot	Q9SZE8	2e-24	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A2R6RNC1	1e-88	A0A2R6RNC1_ACTCH; LOB domain-containing protein
STRING	Solyc04g077990.2.1	2e-30	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	9e-27	LOB domain-containing protein 39