PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn157971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TCP | ||||||||
Protein Properties | Length: 252aa MW: 25922.9 Da PI: 4.7167 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 43.3 | 1.4e-13 | 32 | 76 | 38 | 88 |
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 LG+++d++ti WLl+ a+pai+e+tgt++ +a ++ +++ +++ Achn157971 32 ALGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsV-------NGTLKIP 76 59**************************9999844421.......1111222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-9 | 32 | 86 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MASIENQSIE PDDDEINNSH DDLLPPEFTV TALGHKSDGE TIRWLLERAE PAIIEATGTG 60 TVPAIAVSVN GTLKIPTTST AAIDGDTTKK KRKRACNSDF YDVNDSGSSN FAPVAPVTTV 120 TPQGLVPVWA LGGGAGGFVP PSTAVHGGAF FMIPPAVHSN QPQLWAIPAA ATPVFNVSAR 180 PISNFVAASG GGSASSRASG ERKSGKVSTM APSSSSAAPT TTQMLRDFSL EIYDKNELQL 240 MISSGGDPSP S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023753343.1 | 2e-84 | transcription factor TCP19-like | ||||
Swissprot | Q9LT89 | 7e-52 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A2R6RQU2 | 1e-152 | A0A2R6RQU2_ACTCH; Transcription factor like | ||||
STRING | Migut.F00395.1.p | 1e-68 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 1e-49 | TCP family protein |