PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn157191
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 207aa    MW: 22247 Da    PI: 8.3318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn157191genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192575155
         AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++a  Aa+a++aa+++l+g
  Achn157191 25 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAAAAARAYDAAARSLRG 75
                68********.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-132575IPR001471AP2/ERF domain
CDDcd000183.13E-172583No hitNo description
SMARTSM003802.5E-342689IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-212684IPR016177DNA-binding domain
PROSITE profilePS5103223.2752683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-312683IPR001471AP2/ERF domain
PRINTSPR003678.4E-102738IPR001471AP2/ERF domain
PRINTSPR003678.4E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRGRAPAKA EAEAIGSSRN GVVEPRYRGV RKRPWGRFAA EIRDPWKKTR VWLGTFDSAA  60
AAARAYDAAA RSLRGPKAKT NFPLLPIPIP DISNFNHNLV EENQFQGFNS GPTTSSLSST  120
VESFSGPRAS IPPPAVRIRP RMKPAAPAED CRSDCDSSSS VIDDCDADLT SSFRKTLLTF  180
DLNLPPPPED VGVADADDLH ATVLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-192183972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077844.11e-64ethylene-responsive transcription factor 3-like
SwissprotO803396e-41ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A2R6QWI81e-147A0A2R6QWI8_ACTCH; Ethylene-responsive transcription factor 3 like
STRINGXP_004513889.14e-52(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-27ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]