PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn156881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | G2-like | ||||||||
Protein Properties | Length: 222aa MW: 25643.4 Da PI: 7.7634 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.5 | 1.5e-28 | 82 | 131 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+a+e+LGG+ekAtPk il+lm+vkgL ++hvkSHLQ Achn156881 82 PRLRWTPDLHHSFVRAIERLGGQEKATPKLILQLMDVKGLGIAHVKSHLQ 131 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 78 | 131 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-12 | 80 | 135 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-19 | 82 | 131 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-5 | 83 | 131 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSEGMDIQDD KKSETNEEHL KNTSSSVSSQ KLSSFDLNEE ANNGEDSDCN KEDDLGNNNS 60 TISREGNERK AITRQYVRSK MPRLRWTPDL HHSFVRAIER LGGQEKATPK LILQLMDVKG 120 LGIAHVKSHL QPSNWNYRNN TTRIWQFQSY LQDTKTVSNT LERKFNSPFS FQEKRLKREE 180 RLPDLKLRLS ENFENNEERP TYGKNMQEIN TVLSLSLSPH S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-15 | 83 | 131 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-15 | 83 | 131 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-15 | 83 | 131 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-15 | 83 | 131 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-15 | 83 | 131 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-15 | 83 | 131 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-15 | 83 | 131 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-15 | 83 | 131 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-15 | 83 | 131 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-15 | 83 | 131 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-15 | 83 | 131 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-15 | 83 | 131 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028107181.1 | 1e-52 | two-component response regulator ARR12-like | ||||
TrEMBL | A0A2R6QAB8 | 5e-79 | A0A2R6QAB8_ACTCH; Myb family transcription factor | ||||
STRING | XP_007148039.1 | 4e-42 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5433 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-30 | G2-like family protein |