PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn156201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HRT-like
Protein Properties Length: 501aa    MW: 56681.7 Da    PI: 9.722
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn156201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.22.4e-17287315230
    HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                 CGv+l++GsvC+r P++gRKRC+eHKGm+
  Achn156201 287 CGVALGHGSVCRRVPIEGRKRCAEHKGMK 315
                 ****************************8 PP
2HRT-like54.12.6e-17346376131
    HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                 iCGvil+dG++C+r+P++ RKRCeeHKG++i
  Achn156201 346 ICGVILDDGTTCRREPIHRRKRCEEHKGRKI 376
                 8***************************997 PP
3HRT-like603.8e-19419449131
    HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                 iCGv+l+dG++C+r Pv gRKRCeeHKGmRi
  Achn156201 419 ICGVNLKDGTFCRRRPVIGRKRCEEHKGMRI 449
                 8*****************************7 PP
4HRT-like603.8e-19465495131
    HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                 iCGv+l+dG++C+r Pv gRKRCeeHKGmRi
  Achn156201 465 ICGVNLKDGTFCRRRPVIGRKRCEEHKGMRI 495
                 8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MRKKEEGVRI KSLPVAAVLI GPSDWEDHSL GKEGAERYRV HNLPNCSSCS GLYELGIAVP  60
RFCSGHETSK LDPVHIIPVY LGQAENVRTR LQRYGREGAH LENGKSFGEP NDSVRQGLGL  120
FSEIFSRGYS VVYRWAPIPD QSYMQETCSE REHSPLLSFS SLFLNVKQVK NKRDAEATEA  180
QLLNTFDYAW NKGSNGVRRP NEILQKIDRS TSHKTIFPAV ARKLLTFHQK EMGIRIESCK  240
PFQLENSSTY SDQTNNNFLS QILKIGRSQP RVVSVRYDFN EHHSSFCGVA LGHGSVCRRV  300
PIEGRKRCAE HKGMKLNGFT SKLIAEKKSS IDEGDNCALR NDSFPICGVI LDDGTTCRRE  360
PIHRRKRCEE HKGRKITWSL SIPRTESKQG VSPETPKSHE LLWSPVLSET PVSDKMETIC  420
GVNLKDGTFC RRRPVIGRKR CEEHKGMRII VSNHKTPVSD KMETICGVNL KDGTFCRRRP  480
VIGRKRCEEH KGMRIIVSSY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115016.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A2R6Q5080.0A0A2R6Q508_ACTCH; Protein EFFECTOR OF TRANSCRIPTION like
STRINGVIT_11s0016g02440.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-100effector of transcription2