PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn154591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33813.9 Da PI: 9.1635 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 24 | 69 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a +++ ++ +W +a++++ g+t +++ ++ Achn154591 24 KWTPEENKKFENALALFDKDtpdRWYNVAAMIP-GKTVSDVIKQYRE 69 8********************************.*******999986 PP | |||||||
2 | Myb_DNA-binding | 47.3 | 4.9e-15 | 131 | 175 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Achn154591 131 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 175 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 19 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.612 | 20 | 75 | IPR017884 | SANT domain |
SMART | SM00717 | 2.9E-10 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-11 | 23 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-7 | 24 | 70 | No hit | No description |
Pfam | PF00249 | 1.3E-7 | 24 | 69 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.53 | 124 | 180 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-17 | 126 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-17 | 127 | 179 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.1E-13 | 128 | 178 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-13 | 128 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.02E-11 | 131 | 176 | No hit | No description |
Pfam | PF00249 | 1.9E-12 | 131 | 175 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEILSPSSYI TDSNWLFEES KGTKWTPEEN KKFENALALF DKDTPDRWYN VAAMIPGKTV 60 SDVIKQYREL EEDVSDIEAG LIPIPGYNTG SFTLEWVNNQ GSDGFKQFYS PCEKRSSSNR 120 PSDLERKKGV PWTEEEHRQF LMGLKKYGKG DWRNISRNFV TTRTPTQVAS HAQKYFIRQL 180 SGGKDKRRSS IHDITTVNIK DAKHSSPNHM KPPSPDHSAT VARPQQHLNM NSMAGAIYSW 240 NLPSEGPAMD FNVANSSLLM ASSHGLKLQE QNLQRAALNG PMVATHNRGF QMHFSQYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-18 | 22 | 89 | 8 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028057725.1 | 1e-170 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-116 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2R6RRM7 | 0.0 | A0A2R6RRM7_ACTCH; Transcription factor DIVARICATA like | ||||
STRING | XP_006480971.1 | 1e-146 | (Citrus sinensis) | ||||
STRING | XP_006429310.1 | 1e-146 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-114 | MYB family protein |
Publications ? help Back to Top | |||
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