PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn153311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 3679aa    MW: 403028 Da    PI: 6.5241
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn153311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.7e-07782823346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WTteE e++ d     G++ ++ +a+ +  ++t  +c+++++ 
       Achn153311 782 PWTTEEKEIFMDKLSICGKD-FRMVASFLD-HKTTADCIEFYYR 823
                      8*****************99.*********.**********985 PP
2Myb_DNA-binding271e-0810011040344
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                        WT eE  ++++av  +G++ ++ I+r++  +R++ +c+ ++
       Achn153311 1001 HWTDEEKSIFIQAVSSYGKD-FTMISRCVK-TRSRDECIVFF 1040
                       5*****************99.********9.*******8766 PP
3Myb_DNA-binding21.55.3e-0725302571346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                       rWTteE e++ d    +G++ ++ +a+ +  ++t  +c+++++ 
       Achn153311 2530 RWTTEEREIFMDKLSIFGKD-FRMVASFLD-HKTTGDCIEFYYR 2571
                       9*****************99.*********.**********985 PP
4Myb_DNA-binding27.19.5e-0927482787344
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                        WT eE  ++++av  +G++ ++ I+r++  +R++ +c+ ++
       Achn153311 2748 HWTDEEKSIFIQAVSSYGKD-FTMISRCVR-TRSRDECIVFF 2787
                       5*****************99.*********.*******8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-12766826IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-4773825IPR009057Homeodomain-like
PROSITE profilePS5129314.542778829IPR017884SANT domain
SMARTSM007171.2E-6779827IPR001005SANT/Myb domain
PROSITE profilePS5129311.0199971048IPR017884SANT domain
SMARTSM007179.1E-89981046IPR001005SANT/Myb domain
SuperFamilySSF466894.13E-109991048IPR009057Homeodomain-like
PfamPF002491.7E-610011040IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-410011040IPR009057Homeodomain-like
CDDcd001674.09E-610021040No hitNo description
SuperFamilySSF466899.79E-1325142574IPR009057Homeodomain-like
PROSITE profilePS5129314.61125262577IPR017884SANT domain
SMARTSM007171.4E-625272575IPR001005SANT/Myb domain
PROSITE profilePS5129311.08127442795IPR017884SANT domain
SMARTSM007177.2E-827452793IPR001005SANT/Myb domain
SuperFamilySSF466896.71E-1027462795IPR009057Homeodomain-like
PfamPF002491.9E-627482787IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-427482787IPR009057Homeodomain-like
CDDcd001672.78E-627492787No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 3679 aa     Download sequence    Send to blast
MPPEPLPWDR RDFFKERKRE RSSESIGSVS RWKEIPHHGR EYFRTRPPGH GKQGGWHNFS  60
QEPGHGFTPS RPNEKIFGDE NCKPYGSRAD GKFSRNSREN RGSFSQKDWR GQSWQNCSPP  120
TGPGKPILVS DQRSVDDIML YNSHPNSDSE NTSDQIHSKG QHDKKENVNG LGTGQRLETE  180
NTMGSIDWKP LKWSRSGSLT SRGSGFSHSS SSKSMGVDSS EANAELESRD GTPVWSASGD  240
AVACATSAAP SEETNSRKKP RLGWGEGLAK YEKRKVDGPD DGATKNGMVV CANKEPLRFH  300
VPMLFDKSPR FTAISDCGSP GTPSSVGCSS SPGMEDKPPV KGENIDSGTG KLSGSPRLLS  360
QNCVDGIAFN LENTEPIPIA NSSSSLGELL QSDNSSTAMN KLLVWKGNVL KALEMTESEI  420
DLLENELKSL TSESRNCWPC LAGPSPLQGE CQATPCELVI NTGGSLRPAP LQLVSSENII  480
AKEAIGGLEE AHGQLKDEDI DSPGTVTSKF VEPLRSVNTD VLSESVKHDG SNLDLDASKS  540
GNQEVTCSVY GSNKEKEESL SDCDSVGLLM ASKSSAAPVG ASLHSSREEK LYDLILASNK  600
GSASKASDVF NKLLPSDRCH VDILRASSVS SSQNDPLIQE KFATRKRFVR FKQRVIAFKF  660
RAFQHLWKED MRLLSIRKRH AKSQKRLELS SLTPHNYQKH RSSIRSRFSS PAGNLSLVPT  720
AEIIKFTSKL LSDSQVKLYR NSLKMPALIL DKKEKMISRF ISSNGLVEDP YAVEKERVAI  780
NPWTTEEKEI FMDKLSICGK DFRMVASFLD HKTTADCIEF YYRNHKSDWF VKIKKKPELA  840
GQGKLCSTNN YLVTSGKRWS REMNASSLDM LGAAIAANGD DGRQSHQKCK SRFLMRETTV  900
YRAPQGDDGI VQRSGNLDSF SNESERETVA ADVLAGIYGS ISSEAMSSCI TSSFELGESY  960
KDWKCQNVGS STRRPLTPEV AHNIDDGTCS DESCGEMDPT HWTDEEKSIF IQAVSSYGKD  1020
FTMISRCVKT RSRDECIVFF SKARKCLGLD MVRSRPGNEE MPASDNGNGG GGDNEDACVV  1080
ETGSVICTEI SGSKIDEDMM LSDLNINHCE SDPAETVNVQ TDLNRLEEST VINGTGGIDC  1140
KNPELQSGNM VTEDWQTDCK QELPFDGKST RENGVDSTTV SVQACEDTVL LHDTSTGGDG  1200
VAVKGTLLSA EEANFHGPSL SAAEGEIIAV GLELEGQQLV LENNSNNKEE ENGGVSTSGP  1260
SDLNSSEDWH MKQKSSNLAA VTNSPVEFGG DPNQEPMISL EFNPSQKPYG ISMEQIVPLT  1320
NANSPPSQHE KTLNPNTAST LDLEKISDEQ SQKRASLDDH NPHQSADTVL RCANSCQILR  1380
GYPLRLSTKK EVNGDSSSLQ SYSKECLLQK CNSSQTQNSV AELPFLSQEQ RIDHSQPPPC  1440
SLSDTEKPCR NGDLKLFGKI LTYPKSQQQN EDISVNHENK DKGVQPPKLS SKTFNLKFNG  1500
THSVDGNSVP PKLDHINYLG LENLPMRSYG YWDGTRIRTG FSSLPDSAIL LAKYPAAFSN  1560
YSSSSDSEQQ RLNSGARSNE RNLNGVSVFS TREKSSSNGV ADYPLYRNRE GRVQPFTVDM  1620
KQRQEMLLSE MQRRNGFEVV SNIPQATTKG MVGINVVGRG GILVGACTTG VSDPVAAIKM  1680
HYAKAEQYGG QTASIVREDE SWRGKGDLGR VSWVFGDASL NRPLRVRVSI IDAIEGCFFM  1740
PPEPLPWDRR DFFKERKRER STESIGFVSR WRENPHHGHE FVRSRPPGHA KQGGRHNFSQ  1800
EPGHEFTPSR SNEKIFGDEN CRPSESLADG KFSRNSRENR GSFSQKDWRG HSWENGSSPN  1860
GPGRSTSVSD QRSVDDMIPY DSHPHSDFVN NWDQIHSEGQ NNQTGRVNGL GAGQILEREN  1920
LMGSIDKSPL KWPRSGSLTS RGSGFSHSSS SKSMGVDPGD AKAKLEPRNG TPVQSPSGDA  1980
VACATSAALS EETNSRKKPR LGWGEGLAKY EKKKVDGPDD SATKNGMVVC VNTEPLHSNG  2040
SILSDKSPRF TAFSDCASPG TPSSVACSTS TGMEDKPPVK RENIDNDTSK LSGSPRLLSQ  2100
NHVKGIDFNL ENSDLIPIAN LCSSLGELLQ SDNPVDSSFE RSTAMNKLLV WKGDVLKTLE  2160
MTESEIDLLE NELKLLTSES RSSCHCLAGS SSLQRECQAK PCEELLVNSS GSLRPAPLQL  2220
VSSGDMIAKE AIGGLEEARG QLKDEDIDSP GTVSSKFVEP HCSVNAAAMS ESVKHGGSKL  2280
DLDASKPSNQ EVTCSVYGSN GKKEESLSDC DSGGQLMASK SCAAPVGASL HSSREDKLYD  2340
LILTSNKDSA RKASDVFNKL LPSDRCHVDI LRASSVSRSQ NDPLIQEKFA TRKRFVRFKQ  2400
RVITLKFWAF QHLWKEDMRL LSIRKHHAKS QKRLELSSRT THYYQKYRSS ICSRFSSPAR  2460
NLSLVPTPEI SKFITSKLLS DSQVKLYRNS LKMPAMILDK KEKMISRFIT SNGLVEDPYA  2520
IEKERVTINR WTTEEREIFM DKLSIFGKDF RMVASFLDHK TTGDCIEFYY RNHKSDWFVK  2580
IKKPELAGQG KLCSTNNYLV TSGKRWNREM NASSLDMLGA AIAANGDDGR QSLQKCKSRF  2640
LMGETTVYRA PRGDDGIVQR SGNLDRFSNE SERETVAADV LAGICGSIPS EAMSSCIKSS  2700
YKPGESCKDW KCQKVGSSTR WPLTTVVAQN VVDGTCSDES CGEMDPTHWT DEEKSIFIQA  2760
VSSYGKDFTM ISRCVRTRSR DECIVFFSKA RKCLGLDMIR PRPGDEEVHA NDNVNGSGGD  2820
NEDACVVETG SVICREISGS KIDEETMLSD LNKDHCESDP TETMNVQTDR NSLDENNGTG  2880
GIGCKDPELQ SENMVADDRQ SDGKLELHFD GDFKMDNGID TMTVIVQGHK DAVFPPATET  2940
GGDEATVEGT SFGEPLSAKE ADGQGLSGSG ADGDIIAVGQ KLGVQQPASE NNLNEKQEEN  3000
GYTSTSDYSD LYSVENLHAN RKSSNLAEDI NTCMEFGGDH KQEPKISLEL NPPPESDVIS  3060
VEHNVPLVNA NSLTKDPPAS QHELILSPDK PCTLGLEKMS DNQCKKSARS DDHNLHQSGD  3120
TVLGHTNSSQ ILRGYPLRLS TKKEGCFLRK CKNSQTQSLA AELPFLSPEH KTDHSQPPPE  3180
KSYRNGDLKL FGKILTYPTS QQNEDIGVIH ENKDEGVQHP KLSSKTFNLK FKGTVSVDGN  3240
SIPPKLDHIN YLGLESLPVR SYGYWDGTRT RTGYSSLPDS AILLAKYPAA FSNCSSLSDS  3300
EQQQSHSVVR SNERNLNGVS GFSSRERSIS NGVADSQLYR NREGVSVQPL TVDMKQRQEM  3360
LFSEMQRRNG LEAVSNVPQA AKGVVGINMG GRGGILGGAC TGVSDSVAVI KMHYAKAEQY  3420
GVQTTSVIRE EESWRGKGDL GRFCPHCKVV GHTEEGFNAK KSKAKITEPA QARDSVNAGE  3480
KGTDSQVADS AVISKGTQDN VNPAKTPAII SSSTNKFSVL HRNPETEDEL IQNLGSSAQV  3540
EDKSSDQVQA GNIQQKVQLG SKVYSQQVKQ IASEELNLKL QQSSKSQALG TAADLKSKPA  3600
QAGRKFGAVN PSGKIQEKVH TSSNSKSSPP PLAHVGKKEV KAEEKRKKDS KQAEKKGRAV  3660
NFVEFCADLG GGSSTRSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-147452576991NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-147452576991NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257274KKPRLGWGEGLAKYEKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126949.10.0uncharacterized protein LOC114323546 isoform X1
TrEMBLA0A2R6RTR70.0A0A2R6RTR7_ACTCH; Nuclear receptor corepressor 1 like
STRINGVIT_13s0019g04010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-154MYB family protein