PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn150591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TALE | ||||||||
Protein Properties | Length: 258aa MW: 29223.1 Da PI: 5.4559 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.2 | 1.5e-09 | 185 | 219 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Achn150591 185 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 219 569*****************************885 PP | |||||||
2 | ELK | 41.7 | 2.4e-14 | 139 | 160 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Achn150591 139 ELKGQLLRKYSGYLGSLKQEFM 160 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 8.9E-27 | 52 | 103 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.6E-22 | 56 | 102 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.8E-8 | 139 | 160 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 139 | 159 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.9E-11 | 139 | 160 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.989 | 159 | 222 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-19 | 161 | 236 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.4E-13 | 161 | 226 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 164 | 224 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.91E-12 | 171 | 223 | No hit | No description |
Pfam | PF05920 | 4.0E-17 | 179 | 218 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 197 | 220 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAEPEAQLAK SLLCHTYGLE KSTRTKVLEI GAPPEVVARL EEACSSAAGV GRAGCVGEDP 60 ALDQFMEAYC EMLTKYEQEL SNPFKEAMVF LSRIECQFKS LTVASSDSAC GEGLDRNGSS 120 EEEADVNNNF IDPQAEDREL KGQLLRKYSG YLGSLKQEFM KKRKKGKLPK EARQQLLDWW 180 SRHYKWPYPS ESQKLALAES TGLDQKQINN WFINQRKRHW KPSEDMQFVV MDATHPHYYM 240 DNVLGNPFPM DISPTLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 163 | LKQEFMKKRK |
2 | 160 | 164 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889118.1 | 1e-151 | homeobox protein SBH1 | ||||
Swissprot | P46608 | 1e-133 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A2R6RB92 | 1e-170 | A0A2R6RB92_ACTCH; Homeobox protein like isoform 1 | ||||
STRING | VIT_10s0116g00190.t01 | 1e-147 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6835 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-127 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
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