PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn149891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 235aa MW: 26502.1 Da PI: 9.5536 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37.9 | 3.9e-12 | 117 | 143 | 1 | 27 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekA 27 k r+rWt++LH+rFve+v++LGG+ek Achn149891 117 KSRIRWTQDLHKRFVECVNRLGGAEKK 143 68**********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-5 | 115 | 164 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-9 | 116 | 152 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 6.6E-16 | 162 | 205 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MHRAVVQMCQ PSKADWEKQN YLNLEQSNTL GSLVKSAFSS NRNCTSSEKF VSSCGDLQER 60 KILMLLQNKC EVENSIPNPR QPCTGFGGYQ HRPPNNSNGS LSLAASNSAS SSSLIPKSRI 120 RWTQDLHKRF VECVNRLGGA EKKFDMALLN SMPQLDSKTG TQIVDALRQQ IEVQRRLYEQ 180 LESQRHLQLQ IEEQGKQLKK ILDHQMIKNK TLIDNAKDTT QSNVSTPLRP FESI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | Q0WVU3 | 1e-28 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A2R6RD20 | 1e-142 | A0A2R6RD20_ACTCH; Myb family transcription factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 8e-29 | G2-like family protein |