PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn149081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22442.9 Da PI: 4.8601 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 40 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++k+ g+Wv+eIr+ + r++lg+f t+e+Aa a++ a+++l+g Achn149081 40 PVYRGVRRRKSGGKWVSEIRElR-----SpNRIWLGTFPTPEMAAVAYDVAALALRG 91 68*******************66.....689************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-12 | 40 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-27 | 41 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.786 | 41 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 41 | 100 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-32 | 41 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-9 | 42 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-28 | 42 | 99 | No hit | No description |
PRINTS | PR00367 | 4.7E-9 | 81 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MQHLLRNLMS HSSNPSSGGN GGGGSGMFDM GSTRVSGRHP VYRGVRRRKS GGKWVSEIRE 60 LRSPNRIWLG TFPTPEMAAV AYDVAALALR GSEAELNFPG SAFSLPVPAS TAARDIQMAA 120 ASAATAVGAV VDSFSESQND HLDKYATSQE SENPIGFHEF FDEDLIFDMP NVLVNLAQGM 180 LLSPPRYDFA GEDNGDENTG DQNLWKFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 29 | 99 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028069670.1 | 7e-72 | ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 8e-53 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A2R6R7S5 | 1e-150 | A0A2R6R7S5_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | XP_009353175.1 | 2e-70 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-44 | ERF family protein |