PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn149051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 485aa    MW: 54400.8 Da    PI: 6.5723
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn149051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.16.7e-25121220186
    trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                 +Wt+ +v++Li ++ +++++ +++              +kk++W++vs++m+ergf++sp+qC++k+++lnkryk++k++ +k+ +++++++ +++d++
  Achn149051 121 KWTDGMVRLLIVVVFYIGDEAGSEGndpavkkkavgvlQKKGKWKSVSRAMMERGFNVSPQQCEDKFNDLNKRYKRVKDILGKGtACQVVENQSLLDKM 219
                 7**************99888876433677888899999**********************************************55************* PP

    trihelix  86 e 86 
                 +
  Achn149051 220 D 220
                 8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-21119246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MLSDSAWNNA FKYGEAAASG PGGMYSTMGS GMLGLEMSLH HHPPQNPQNP NPLQQHPHSQ  60
MVAFGHHEAE HHPQTQQSTK QNYPFAPRGK PQQLTLSDED EPGDSASDGK RKNISPWQRM  120
KWTDGMVRLL IVVVFYIGDE AGSEGNDPAV KKKAVGVLQK KGKWKSVSRA MMERGFNVSP  180
QQCEDKFNDL NKRYKRVKDI LGKGTACQVV ENQSLLDKMD HLTPKKKEEV KKLLNSKHLF  240
FREMCAYHNS CGGGGGSGGG GGSGASAAHH SPDVAAEASQ PIQQQLQGQR CFHSSDNTLI  300
GRLETDGSKM AVEEEEDDDS EDENDDEDDE DEIVGVRENE LGYEDDDNGN EKSSRKRART  360
GTPMLSSPLI QQLSTELASV VQDVTKSLSE KGQWMNSRLL QLEEQRMSFQ FKTFAIEKQR  420
LKWVKFSTKK ERKMERDKLK NERMRLENER MLLLLRQKEL ELLELQQQQQ ICSNKRSDPS  480
SITG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021289063.10.0transcriptional regulator EFH1 isoform X1
RefseqXP_022767190.10.0nucleolar transcription factor 1-B-like isoform X1
TrEMBLA0A2R6R7V00.0A0A2R6R7V0_ACTCH; Trihelix transcription factor
STRINGcassava4.1_006702m1e-177(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-89sequence-specific DNA binding transcription factors