PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn147981

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bZIP

Protein Properties

Length: 355aa MW: 38790.8 Da PI: 5.2738

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn147981	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.9	5.1e-09	152	200	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv +L++e ++L +l + Achn147981 152 KRAKRILANRQSAARSKERKARYISELERKVLTLQTEATTLSAQLTLFQ 200 9****************************************99887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	148	212	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.461	150	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-7	150	206	No hit	No description
Pfam	PF00170	7.3E-8	152	200	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.54E-10	152	203	No hit	No description
CDD	cd14703	3.67E-22	153	202	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MQDPSNSNMN NAQKPPMTSF GNPTAAFRSA NHRRAHSEVN FRGLPDDLDL GSDPFGGQPG 60 SFDEIGSEDD LFSTYMDVEK LGSGSAEGGD CRIDNAGGGG EPEEAGEGEK SVRPRHRYSN 120 SVDGSVFLSE AIEAKKAMAP DKLAELWSID PKRAKRILAN RQSAARSKER KARYISELER 180 KVLTLQTEAT TLSAQLTLFQ RDTTGLSNEN TELKLRLQAM EQQAQLRDAL NEALKHELDR 240 LKVATGEMAS PSDAYNFGMQ HLPYTQSSFY SQQPQNGTSD SQQMQMPQFH PLQSNMLNHG 300 QHPLLVASQS QSLSEMLQQD SLGRLQGLDI NARGSHLVKS EGPSISASES SSTF*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MQDPSNSNMN NAQKPPMTSF GNPTAAFRSA NHRRAHSEVN FRGLPDDLDL GSDPFGGQPG  60
SFDEIGSEDD LFSTYMDVEK LGSGSAEGGD CRIDNAGGGG EPEEAGEGEK SVRPRHRYSN  120
SVDGSVFLSE AIEAKKAMAP DKLAELWSID PKRAKRILAN RQSAARSKER KARYISELER  180
KVLTLQTEAT TLSAQLTLFQ RDTTGLSNEN TELKLRLQAM EQQAQLRDAL NEALKHELDR  240
LKVATGEMAS PSDAYNFGMQ HLPYTQSSFY SQQPQNGTSD SQQMQMPQFH PLQSNMLNHG  300
QHPLLVASQS QSLSEMLQQD SLGRLQGLDI NARGSHLVKS EGPSISASES SSTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028084122.1	1e-178	transcription factor RF2b-like
Swissprot	O22873	1e-117	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2R6PLP4	0.0	A0A2R6PLP4_ACTCH; Transcription factor RF2b like
STRING	VIT_13s0067g02900.t01	1e-169	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	5e-99	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]