PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn146311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CPP
Protein Properties Length: 553aa    MW: 59778.2 Da    PI: 8.1823
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn146311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.18.2e-14104143242
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                 ++k+CnCk+skClk+YCeCfa++++C+  C+C +C+N+ e+
  Achn146311 104 KQKHCNCKHSKCLKLYCECFANKSYCDG-CNCVNCHNNVEN 143
                 89**************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.4E-17103143IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.219104196IPR005172CRC domain
PfamPF036381.0E-10105140IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MEKGEGGDFS PKTDQSDTLP DFPAKKLARQ LDFTGFSGAS GTVVLPDHPH QSPVKPPLPP  60
PQQRLLSTPK QSQRPLPPIR TVKPESPRAR PRTSVEVKDG TPKKQKHCNC KHSKCLKLYC  120
ECFANKSYCD GCNCVNCHNN VENEAARREA VEATLERNPN AFKPKIYGSP HGTRDNRANI  180
LCSENCKCMD CKNFEGSEER QALFHGDHTN SVAYIQQAAN AAITDAIGSS GYGSPPLSKR  240
RKGQELFFGP TDKDSSIHRL AQYQQANHIK ASAHSPSLSS IPVARVNSAA TGPSKFTYRS  300
LLADIIQPQD LKELCSVLTV LSAEAANTLT DQRNVMERQA EDRMESPLAL SAKDRLQSQK  360
ECEVQKAVAE DCSRANQAEK ISPTSSGGAD LSKARPMSPG TLALLCEEQD TMFMAATSPK  420
GLMGHGCNAS SQLPHGQGMT EVYAEQERVV LNKFRDCLNR LITLGEIKET KCSLLARTDS  480
GGLSNCNGAA IARIETKNQQ EPSSNGGVKS TGLPSSATSQ TIHAATIASN NDPLPKIPAE  540
NGDVKPRTEK EM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-17962052132Protein lin-54 homolog
5fd3_B2e-17962052132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077343.10.0protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_028077344.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-167TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2R6Q4U10.0A0A2R6Q4U1_ACTCH; Protein tesmin/TSO1-like
STRINGXP_006451190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-147Tesmin/TSO1-like CXC domain-containing protein