PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn144741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 330aa    MW: 37071 Da    PI: 8.473
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn144741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ +++ g++R++k+c++rw +yl
       Achn144741 14 KGPWTPEEDQKLLAYIEEYGHGSWRALSAKTGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding513.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++I ++++ +Rt++++k++w+++l
       Achn144741  67 RGNFSLQEEQTIIKLHALLGNR-WSAIRAHLP-KRTDNEIKNHWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-25664IPR009057Homeodomain-like
PROSITE profilePS5129418.787961IPR017930Myb domain
SuperFamilySSF466892.29E-3011108IPR009057Homeodomain-like
SMARTSM007171.2E-151363IPR001005SANT/Myb domain
PfamPF002491.8E-161461IPR001005SANT/Myb domain
CDDcd001671.41E-111661No hitNo description
PROSITE profilePS5129425.34462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2565116IPR009057Homeodomain-like
SMARTSM007175.5E-1666114IPR001005SANT/Myb domain
PfamPF002494.2E-1567112IPR001005SANT/Myb domain
CDDcd001671.01E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRSPYCENA GLKKGPWTPE EDQKLLAYIE EYGHGSWRAL SAKTGLRRCG KSCRLRWTNY  60
LRPDIKRGNF SLQEEQTIIK LHALLGNRWS AIRAHLPKRT DNEIKNHWNT HLKKRLTKMG  120
IDPMTHKPKS HALCPSQLKD AANLSHMAQW ENARLEAEAR LVRKSKLHVS TPFQTQLGSS  180
AAPDRLVNKD LAPPPPPLPP LCLDVLTAWQ GSFTNSTSMP SLQYNNGGAF DETLGMRVED  240
HGFGKSNKFS ELKEIIDAYN IGEALKAENA NVLLPNFMED LSDLLFESSN ELYGNSNNVV  300
GISCYGDFEE NNKIDSHWNN MVNLVNCSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744640.0DQ074464.1 Malus x domestica MYB13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114401.11e-132transcription factor MYB16-like
SwissprotQ9LE632e-95MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2R6QQZ00.0A0A2R6QQZ0_ACTCH; Transcription factor like
STRINGXP_010258093.11e-116(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-95myb domain protein 16